BAC Information

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BAC

Clone NameMSMg01-374B05
Chromosome4 (Build37)
Map Location 62,136,785 - 62,137,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31
Downstream geneBspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374B05.T7 (MSMg01no374_b05.b1)MSMg01-374B05.TJ (MSMg01no374_b05.g1)
ACCAG479956AG479957
length783766
length of high quality
(start - end)		576 (45 - 620)368 (58 - 425)
definitionCHROMAT_FILE: MSMg01no374_b05.b1 PHD_FILE: MSMg01no374_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:11 2005CHROMAT_FILE: MSMg01no374_b05.g1 PHD_FILE: MSMg01no374_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCTCCGTATTGACTCTACAGAGAAAGTAACTGTGAGTTGATTTTA
TTTCTGCTTTCTGTAATTCTTGGAGCTAAACTCATCCACTCGGTCCATCC
ATTTTATAGAATAATATTTGTGTCCAGTTTTAGAACTGTTAATAAGAACC
GATTAGATCATGTAAATAAATGTATAGTAATTTGATCTTTAGGTTATATG
TAAGGAGGAAGTGGGGACCATATTTCTTTCTGTGGGTGATTAAAAAAAAA
AAAAGAAAACTACTTAGTCACAAAGATTTCCGGGGCCTTGAGGTGGGTAG
CACTTGAACTTGAGGGCTCATAAAAGCAGGAAATGCTGTGGAACCAGAGA
AGAAAGGATACCATTGTCACCCTACAGTCATTCAACAGCTTTATTGGGTA
ACTACCTGCAGACCTGCCCTGTTTAAGACATTGGAGTTACAACGGTCAAG
AGGAACGAAGTCATCTCCATAGACAAATAAAACATAATGTCGGCAATAAG
TGCCACGAACAAGATTCAAAGTTGCCAGGCCTGGTGGCACAGGTTCATGA
TACCAGCTATTTGGAAGAATGAGACAGGGAGATTCCAAATTTGAGGCCAG
TCTGAGACACAGGTTAGGTTCCAGTTCAGCATGAGTAAACTAGCTTAACA
TTATATAATACAACGGGAAAAGTACCCTAAGTTAATTTCCAGTGTTGGAC
AACCAAGGGGAGAAAAATTGAAAAGGTTTATTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTCTCTGCATCTAATGAGATGATCATGTGGTTTTCGTCTT
TGAGTTTGTTTATATAATGGATTACGTTGATGGATTTCCATATATTAAAC
CATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGC
TTTAATGTGTTCTTGGATTTGGTTAGCGAAAATTTTATTAAGTATTTTTG
CATCGATATTCATAAGGGAAATTTGTCTGAAGTTCTCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGT
ACAGTACCTTCTACTTCTATTTTGTGGAATAGCTTGTGCAGAACTGCAAT
TAGATCTTCTTTGAAGGTCTGATAGAACTCCGCACTATACCCATCTGGCC
CTGGGCTTATTTTGGTTTGCAGATAATATTGACCTCTTCCTATCCTTTAG
GCGACTAGTTATTGTTCATTATTCTACCTCTTCTTCTGAATTTCCCTTGT
TCTCCCGTTTTCTAATTATAATTCTGTTTTTTCTCCCCGTTTTTTCTCTA
TTTTGTTCTACCTTTCTTCATTTTTTCTTGTCTACTCCTTCTTTACCCTC
CCTTAATTGCTTCCTTTTTATTACACTCTCTTTTCTCCTACCCTTTTAAT
CCATCCGCTTAGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_b05.b1 MSMg01no374_b05.b1 CHROMAT_FILE:
MSMg01no374_b05.b1 PHD_FILE: MSMg01no374_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:11 2005
         (576 letters)



>mm_chr4_62136582_62137557
          Length = 976

 Score = 1077 bits (557), Expect = 0.0
 Identities = 569/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccctccgtattgactctacagagaaagtaactgtgagttgattttatttctgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaattcccctccgtattgactctacagagaaagtaactgtgagttgattttatttctgc 717

                                                                       
Query: 64  tttctgtaattcttggagctaaactcatccactcggtccatccattttatagaataatat 123
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 716 tttctgtaattctcggagctaaactcacccactcggtccatccattttatagaataatat 657

                                                                       
Query: 124 ttgtgtccagttttagaactgttaataagaaccgattagatcatgtaaataaatgtatag 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttgtgtccagttctagaactgttaataagaaccgattagatcatgtaaataaatgtatag 597

                                                                       
Query: 184 taatttgatctttaggttatatgtaaggaggaagtggggaccatatttctttctgtgggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 taatttgatctttaggttatatgtaaggaggaagtggggaccatatttctttctgtgggt 537

                                                                       
Query: 244 gattaaaaaaaaaaaaagaaaactacttagtcacaaagatttccggggccttgaggtggg 303
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gattaaaaaaaaagaaagaaaactacttagtcacaaagatttccggggccttgaggtggg 477

                                                                       
Query: 304 tagcacttgaacttgagggctcataaaagcaggaaatgctgtggaaccagagaagaaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tagcacttgaacttgagggctcataaaagcaggaaatgctgtggaaccagagaagaaagg 417

                                                                       
Query: 364 ataccattgtcaccctacagtcattcaacagctttattgggtaactacctgcagacctgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ataccattgtcaccctacagtcattcaacagctttattgggtaactacctgcagacctgc 357

                                                                       
Query: 424 cctgtttaagacattggagttacaacggtcaagaggaacgaagtcatctccatagacaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cctgtttaagacattggagttacaacggtcaagaggaacgaagtcatctccatagacaaa 297

                                                                       
Query: 484 taaaacataatgtcggcaataagtgccacgaacaagattcaaagttgccaggcctggtgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 taaaacataatgtcggcaataagtgccacgaacaagattcaaagttgccaggcctggtgg 237

                                            
Query: 544 cacaggttcatgataccagctatttggaagaat 576
           |||||||||||||||||||||||||||||||||
Sbjct: 236 cacaggttcatgataccagctatttggaagaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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