GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGTTATTCAATTTTTTAATGGGACTTTTTGGGGTTTTTTTGGA
GTCTAGCTTCTTGAGTTCCTTGTATTTTTTGGATATTAGCCCTCTGTCAG
ATGTAGTGAAGATCTTTTCCCAGTCTGTAGGTTGTTGTTTTATCAACAGG
GTTTTTGTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTTGTTTTT
TTTTTTGTTTTTTTTTTTTGATTTTTTGATTTTTTTTTGCCTTACAAAAC
CTTTTCAGTTCATGATGTCTCTTTTTCCGATTGTTGATCTCAGAGTCTGG
CCCACTAGTGTTCTGTTCAGAAAAATTTCCCATGCCAATGCATTTGAGGC
TATTTCCCACTTTCTCTTCTATTAGATTCATTGTATCTTGTTTTATGTTG
AGGTCCTTGATCTACTTGGACTCCAGCTTTGTTCAAGGTGATAAATATGG
ATCAATTTGCATTCTTCTACAAGCAGACCGCCAGTTAGACCAGCACCATT
TGTTGAAGTAAAATATTTTAAATATACCCTTGAAATTTTTAAAATTAAGA
CATTTTTATTTAAGTGTTGAATGAACCTAAACCCTGAATGAACTCCTTAC
CACAAGGAGTTGTTTTTTATTTATAGCAAACCTTTTTAAAGGTGTATACT
CTCTCGCAAAGGCAAAACTGAAGAACTTTCGCTCCCCCCCCCACGCTTTC
CTTGGGCAAAAATTTTCTCTTA

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCAGTGCTTTAGCCAGTGACTAACAG
GAAAATATGCTAAGAAATACATGAAATACATGAGCAGGGACCAGGTAGAC
AGCTCTTACACAATGACTTTCCTCTTATTTTCTGAAGAAATTAAAGCAAA
CGTAATATTCCTCAAGGCATAAATACTTGTTGAGAATACCTGGGATAACA
TAAAAATTCATAAAACAAAGCTTTTTTAAAAAGGCATTTTTACAGGCTTG
AGGGTAAGAGGAAGACTGTCAATTTTACTACCTCTTGAGGCTCCCAGGGA
AATTCTCTCTCCTCTCTTCTAGCCCCTGTTTGCTGCTAATAATTAGCTCT
GTTTTGTTTTGTTCTCCATACAATATATCTGGAAACATGTCTTCTGTGAG
GTATAAACTCTCCCACCATATCACAGTCTTCCATAAATATTAAGATGTTC
TATAGATACATTGTTCCACTAGTCTCTGCTTATACAGACCTTTATCTTTA
TTGTCTAATGATATCTTTATGGACCTGACCTATCAGCAGATGGTAAAGAC
ATCTATTTAACCTAATGTTAAAGAAAAATCTTAAGAATTTCCTTTTTGGA
GCATCATCTCATCGCCATTAAGCAAGACAGAAAATGAGGNTGTGGTGTTG
AAAAAAAAGGAACCGCTTAGCAAGCTTCCTGAGACCTGGTTGTCTAGTAA
GAAAGAAAAAA

Query= MSMg01no374_h12.g1 MSMg01no374_h12.g1 CHROMAT_FILE:
MSMg01no374_h12.g1 PHD_FILE: MSMg01no374_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:43 2005
         (540 letters)



>mm_chr4_39238708_39239648
          Length = 941

 Score =  899 bits (465), Expect = 0.0
 Identities = 522/543 (96%), Gaps = 5/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagtgctttagccagtgactaacaggaaaatatgctaagaaatacatgaaatacatga 60
           ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 201 atcagtgctttagccggtgactaacaggaaaatgtgctaagcaatacatgaaatacatga 260

                                                                       
Query: 61  gcagggaccaggtagacagctcttacacaatgactttcctcttattttctgaagaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagggaccaggtagacagctcttacacaatgactttcctcttattttctgaagaaatta 320

                                                                       
Query: 121 aagcaaacgtaatattcctcaaggcataaatacttgttgagaatacctgggataacataa 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaaacataatattcctcaaggcataaatacttgttgagaatacctgggataacataa 380

                                                                       
Query: 181 aaattcataaaacaaagcttttttaaaaaggcatttttacaggcttgagggtaagaggaa 240
           ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||| |
Sbjct: 381 aaattcataaaacaaagc--tttaaaaaaggcatttttacaggcttgagggtaagaggga 438

                                                                       
Query: 241 gactgtcaattttactacctcttgaggctcccagggaaattctctctcctctcttctagc 300
           ||||||||  |||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct: 439 gactgtcaggtttactacctcttgagactcccaggaaaattctctctcttctcttctagc 498

                                                                       
Query: 301 ccctgtttgctgctaataattagctctgttttgttttgttctccatacaatatatctgga 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 499 ccctgtttgctgctaataattagctctgttttgttttgttcttcatacaatatatctgga 558

                                                                       
Query: 361 aacatgtcttctgtgaggtataaactctcccaccatatcacagtcttccataaatattaa 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 559 aacatgtcttctgtgaggtataaactctcccaccatatcacggtcttccataaatattaa 618

                                                                       
Query: 421 gatgttctatagatacattgttccactagtctctgcttatacagacctttatctt---ta 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 619 gatgttctatagatacattgttccactagtctctgcttatacagacctttatcttgttta 678

                                                                       
Query: 478 ttgtctaatgatatctttatggacctgacctatcagcagatggtaaagacatctatttaa 537
           |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 679 ttgtctaatgatatctttctggacctgacctatcagcagacggtaaagacatttatttaa 738

              
Query: 538 cct 540
           |||
Sbjct: 739 cct 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space:   493430
Effective search space used:   493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)