Query= MSMg01no375_c17.b1 MSMg01no375_c17.b1 CHROMAT_FILE:
MSMg01no375_c17.b1 PHD_FILE: MSMg01no375_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:40 2005
(498 letters)
>mm_chr4_108361264_108362159
Length = 896
Score = 915 bits (473), Expect = 0.0
Identities = 489/495 (98%), Gaps = 2/495 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaggggcatctggtgtggtggcccacacgtttaatcccagcacttgggaggca 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ggaattcaaggggcacctagtgtggtggcccacacgtttaatcccagcacttgggaggca 803
Query: 64 gaggcaggtgacctttatgagtttgaggccagattggtctatatagtgagtctcaggaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gaggcaggtgacctttatgagtttgaggccagattggtctatatagtgagtctcaggaca 743
Query: 124 accaaggctacatagtgagaccttgtctttaattaaaaaaaataaattccaagtgtttac 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gccaaggctacatagtgagaccttgtctttaattaaaaaaaataaattccaagtgtttac 683
Query: 184 ccgaatagttacttctattttactggagtcctgcatacactctaatgctcacattgtgct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccgaatagttacttctattttactggagtcctgcatacactctaatgctcacattgtgct 623
Query: 244 ttgtgtgttctaggctgatacttctctgttctctgggagcattactcaggttggaagtcc 303
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 t--tgtgttctaggctgatacttctctgttctctgggagcattactcaggttggaagtcc 565
Query: 304 tgttggaagtgcaatgaaccttattcctgaagatggccttcctcccatcctcatctccac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgttggaagtgcaatgaaccttattcctgaagatggccttcctcccatcctcatctccac 505
Query: 364 tggtgtgaaaggaggtatgtgggcttcagtgtttgcacagagtagttaatgcataccaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggtgtgaaaggaggtatgtgggcttcagtgtttgcacagagtagttaatgcataccaca 445
Query: 424 cattgccttctgcttaaggaaaggatgatcagtgatagccattcttctgtctgataagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 cattgccttctgcttaaggaaaggatgatcagtgatagccattcttctgtctgataacaa 385
Query: 484 atacaacttccacaa 498
|||||||||||||||
Sbjct: 384 atacaacttccacaa 370
Score = 83.9 bits (43), Expect = 2e-20
Identities = 88/107 (82%), Gaps = 11/107 (10%)
Strand = Plus / Minus
Query: 25 gtggtggcccacacgtttaatcccagcacttgg------gaggcagaggcaggt-gacct 77
|||||||| ||||| |||||||||||||||||| ||||||||||||||| || |
Sbjct: 116 gtggtggcacacacctttaatcccagcacttgggaggcagaggcagaggcaggtgga--t 59
Query: 78 ttatgagtttgaggccagattggtctatatagtgagtctc-aggaca 123
|| |||||| |||||||| ||||||| | ||||||| || ||||||
Sbjct: 58 ttctgagttcgaggccagcctggtctacagagtgagt-tccaggaca 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 896
Length adjustment: 10
Effective length of query: 488
Effective length of database: 886
Effective search space: 432368
Effective search space used: 432368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_c17.g1 MSMg01no375_c17.g1 CHROMAT_FILE:
MSMg01no375_c17.g1 PHD_FILE: MSMg01no375_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:40 2005
(471 letters)
>mm_chr4_108180544_108181414
Length = 871
Score = 880 bits (455), Expect = 0.0
Identities = 469/477 (98%), Gaps = 6/477 (1%)
Strand = Plus / Plus
Query: 1 tagtttctctattttttctctttctctctcttttattttttaataattttttattactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtttctctattttttctctttctctctcttttattttttaataattttttattactaa 260
Query: 61 tttggaatgcccatttatatagattgaaggctttgacccgaaaagaatggatgactttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggaatgcccatttatatagattgaaggctttgacccgaaaagaatggatgactttca 320
Query: 121 gctgaagggcatagtagaagagaagtttgtgaagtgggaatataattcaagtagtgcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgaagggcatagtagaagagaagtttgtgaagtgggaatataattcaagtagtgcaac 380
Query: 181 tgagaaaaacttaattgctgatgaaaacaaagctaaggcagacgaaccaaaagatgatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagaaaaacttaattgctgatgaaaacaaagctaaggcagacgaaccaaaagatgatac 440
Query: 241 caagaagacagaaacagacaaccaaagtaatgctgcgaaggcaaaacatggcaaagtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagaagacagaaacagacaaccaaagtaatgctgcgaaggcaaaacatggcaaagtaag 500
Query: 301 cttttgtttttgttttttgttttggcttttctatatgtagaatttatgacacctttagtg 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 cttttgtttttgttttttgttttggcttttctacatgtagaatttatgacacctttagtg 560
Query: 361 aacttcttgaatagcagtagattgagctcttggcctcatttcctcaactatacagtgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacttcttgaatagcagtagattgagctcttggcctcatttcctcaactatacagtgagg 620
Query: 421 ggttgaactgtttt------tggtattgagattatctaatacatttatttcatgtat 471
|||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 621 ggttgaactgttttagtttttggtactgagattatctaatacatttatttcatgtat 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
