BAC Information

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BAC

Clone NameMSMg01-375D04
Chromosome4 (Build37)
Map Location 22,090,073 - 22,090,226
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
Downstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D04.T7 (MSMg01no375_d04.b1)MSMg01-375D04.TJ (MSMg01no375_d04.g1)
ACCAG480811AG480812
length753788
length of high quality
(start - end)
492 (49 - 540)162 (80 - 241)
definitionCHROMAT_FILE: MSMg01no375_d04.b1 PHD_FILE: MSMg01no375_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:43 2005CHROMAT_FILE: MSMg01no375_d04.g1 PHD_FILE: MSMg01no375_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTCTGAGTCCCATTTTTTAAAGGGGTTATATGA
TTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATAGATTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGATGGTGTCTTTAGCCTTACAGAAGCTTTGCAATTT
TATGAGGTACCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTT
TTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCACTGTCTCTCGTTTTATGTGGAGTTCCTT
GTTCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTT
GCATTCTTCTACATGTTAACCACCAGTTGTGCCAGCACCATTTTCTGAAA
ATGCTGTCTTTTTTCCACTGGATGGTTTTTGCTCCCTTGTCAAAGATTGA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTACTCCATT
GGTCTACTTGTCTGTCACTATACTAGTACCATGCAGTTTTTATAACAATT
GCTCTGTAATACAGCTTTTAGTCCGGCAAGGTGATTTCCCTCCAGGGTCC
TTTAATCCTGAAAAAAAGTTTTTGGTATTCTAGAAAAATTCGTAAAATGG
CCC
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTGAAGCCTGCTCTATC
CCGTGTTGTATGTTCACCCTCAGCCAGAAGACCTGGACTGTCTGAGTTCT
CACGGCTTCTGCAGGGACATCTTTGGGCGATGTAGCTCTTTCTATTGATT
TTCATAGGGTTATGATCGAAGCAGGAAATAACTTGATGGGAGCAAGGATT
NCNTATTTTGCCTCAGTATTTGGGGGTCCAATCCATCATGGTCGTGGGGG
CAGGAATGGGTCACAGCGTTCCCCACATCTTTATGGTTCAGGAAGCAGAG
AGAGATGAGTGCTGCCCTTTATCCCCACTTTGTTCATTTTCCCCAAGGCC
TGGCACTTTCAGGGATGCTGTATGATGCTGGGTCACTCTACCTTTGAAAT
TTGCCTCCCCCCCNNNNNNNNNNNNNNNTTGGGGNCCTCCGATCNCTGAA
TTCTGCCCTACTTAGGTGNCNTTTTGAATTCAGGCCTTTTTATAGTCTTC
TCTTTGGTACGTGTGGGGCCCTTCGGTTTCTTTCCTTTTACCCCGTGATT
TTTATTTTCTTTTCTCCCTATAATTCTCCCTATGTTTAATTTTTTTCTTT
CCCCCCTTCTCCCTTTCTTTCCTTTCCTTTTTTCCCTTTCCCATTTTTCG
TATCCACCCCCCTTCTCTTCTTGCTTTAGCCCTTAGCTTATTTTCTTCTT
TCTCCTTCCTCCTCGCTCTCCCTCCCGGTTTCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d04.g1 MSMg01no375_d04.g1 CHROMAT_FILE:
MSMg01no375_d04.g1 PHD_FILE: MSMg01no375_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:43 2005
         (162 letters)



>mm_chr4_22089870_22090431
          Length = 562

 Score =  290 bits (150), Expect = 3e-83
 Identities = 153/154 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   attgaagcctgctctatcccgtgttgtatgttcaccctcagccagaagacctggactgtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 attgaagcctgctctatcccgtgttgtatgttcaccctcagccagaagacctggactgtc 263

                                                                       
Query: 64  tgagttctcacggcttctgcagggacatctttgggcgatgtagctctttctattgatttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgagttctcacggcttctgcagggacatctttgggcgatgtagctctttctattgatttt 323

                                             
Query: 124 catagggttatgatcgaagcaggaaataacttga 157
           ||||||||||||||| ||||||||||||||||||
Sbjct: 324 catagggttatgatcaaagcaggaaataacttga 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)