Query= MSMg01no375_e05.b1 MSMg01no375_e05.b1 CHROMAT_FILE:
MSMg01no375_e05.b1 PHD_FILE: MSMg01no375_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:48 2005
(455 letters)
>mm_chr4_10721615_10722469
Length = 855
Score = 818 bits (423), Expect = 0.0
Identities = 446/455 (98%), Gaps = 4/455 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatcacctaggctatgttgtacaaagagcaaccacagggagacaggctaagctt 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcatcaccaaggttatgttgtacaaagagcaaccacagggagacaggctaagctt 261
Query: 64 caaagcttacacaaggcagggcaggttacaagcacgttgccagttttattttgttcctag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaagcttacacaaggcagggcaggttacaagcacgttgccagttttattttgttcctag 321
Query: 124 acaactagctagcatttactaacactaccaagattagcaaatctattttttaaaaacata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 322 acaactagctagcatttactaacactaccaagattagcaaatctattttttaaaa-cata 380
Query: 184 ttttaaaagcttggaagagttgtacatgtctctcttcctggaactgtggctgggtcagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaaaagcttggaagagttgtacatgtctctcttcctggaactgtggctgggtcagag 440
Query: 244 gacagagagtttcagaccagcctggactactaaatgactttgaaaacaacctaaactatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagagagtttcagaccagcctggactactaaatgactttgaaaacaacctaaactatg 500
Query: 304 tagtaagggagttgatataga---cagacagacagaaagacagacagatgatagatttag 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtaagggagttgatatagaagacagacagacagaaagacagacagatgatagatttag 560
Query: 361 aaacaaagaagcaaaaatctggggaaacttaaaaatcttgagaaaagtccaagtaactcc 420
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 aaacaaagaaacaaaaatctggggaaacttaaaattcttgagaaaagtccaagtaactcc 620
Query: 421 taatatatggctttttaaaaaatatttaaagggca 455
|| ||||||||||||||||||||||||||||||||
Sbjct: 621 tagtatatggctttttaaaaaatatttaaagggca 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_e05.g1 MSMg01no375_e05.g1 CHROMAT_FILE:
MSMg01no375_e05.g1 PHD_FILE: MSMg01no375_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:48 2005
(391 letters)
>mm_chr4_10863687_10864478
Length = 792
Score = 704 bits (364), Expect = 0.0
Identities = 385/392 (98%), Gaps = 1/392 (0%)
Strand = Plus / Minus
Query: 1 tgaggcaccctaccaaagcagacgtgaggagaaaaccggtgttggtcaagatgaggaggt 60
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 592 tgaggcaccccaccaaagcagatgtgaggagaaaaccagtgttggtcaagatgaggaggt 533
Query: 61 ggcagaagccagcctgtaatccagcctgactcagaaggaagtgcatggggtgaagtggga 120
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 532 ggcagaagccagcctgcaatccagcctgactcagaaggaagtgcattgggtgaagtggga 473
Query: 121 tgctgccgggagagctccaa-gtgctccagaggcctggagtttgcaccgcagtataggaa 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 472 tgctgccgggagagctccaaggtgctccagaggcctggagtttgcaccgcagtgtaggaa 413
Query: 180 tagagagctctggcaggttcatggaagtgagagccagctatatccaggaacagcactcct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tagagagctctggcaggttcatggaagtgagagccagctatatccaggaacagcactcct 353
Query: 240 ttagcccaactcaaagtcacactcgtgatttctgtgtgtgccaagtcttggaagaagtgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttagcccaactcaaagtcacactcgtgatttctgtgtgtgccaagtcttggaagaagtgg 293
Query: 300 cacctccaggcccctctatcactactgggcacgattagtgaccttattcttggcattgaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cacctccaggcccctctatcactactgggcacgattagtgaccttattcttggcattgaa 233
Query: 360 ggtctctggacctcatttatagttgactgccc 391
||||||||||||||||||||||||||||||||
Sbjct: 232 ggtctctggacctcatttatagttgactgccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 792
Length adjustment: 9
Effective length of query: 382
Effective length of database: 783
Effective search space: 299106
Effective search space used: 299106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
