BAC Information

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BAC

Clone NameMSMg01-375K24
Chromosome4 (Build37)
Map Location 131,090,822 - 131,242,624
singlet/doubletdoublet
Overlap geneLOC100039799
Upstream gene2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832
Downstream genePtpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375K24.T7 (MSMg01no375_k24.b1)MSMg01-375K24.TJ (MSMg01no375_k24.g1)
ACCAG481181AG481182
length784790
length of high quality
(start - end)		456 (49 - 504)434 (76 - 509)
definitionCHROMAT_FILE: MSMg01no375_k24.b1 PHD_FILE: MSMg01no375_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:21 2005CHROMAT_FILE: MSMg01no375_k24.g1 PHD_FILE: MSMg01no375_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,242,174 - 131,242,624)(131,090,822 - 131,091,255)
sequence
NNNNCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCC
GCGGAATTCCATTGCTTATTTCTTCTCACAACGTAATGCTGAAAGATGCA
GGGGTGGGGGGAAGCCAACCCTTTGATAGATTAGTAATGTCTGCCACTGG
TGGTGCTGCAGACACAGTGGTGCTAGCTGTGCTATGCATTTAGCAGGTAC
TTTCTAAAAAAACACCAAAGCTCAAAGAGAGGATTTTGGGTGACATAACA
GGATTTGTCTCTGAGATAAAGGAGGGTGCCAGCAAAGTGGCCTGCAGTGT
GCTTAGGTGCTGAGTCTAGTCAGCCATGCTCCCACCCCTGTCCTGGCCCT
GTGACAGCCTAGCTCATTTAGGAGAACTTTGTTAGAGAAGGCGTGAGAGG
GCATATACTTCCTGATTAGGTGTGATGGTATTGGCTGCTTGGATTCTGTT
CTCTGAAATTAACTAAAGGTGGCAAGGACAAGAAACTGAACAAAACAGGG
AATTTTGTTTTGGGTTGTTTTTTTTTTTTTCCTCCCTTCATTTTTATTGA
AAACAGAAATGAGCACATCTCCCAACTCCGGGCCTGAAGGTTTCCTCCCC
AACCTATGGAATGGTGGCCCAACCCGAAGGAACTTGATCCCCGCCAAAAT
CCCGGAATGTTTTCCTTCAAGAAAACCTTGAGTTTTCCCAATATTTCCCC
CTGGGAAAACCCCAACCTTTTAAAATTTTTTGTAACACCCTCTGTCTTAA
ATTTGGTGAACTCCTGTTTTTCCACAAAAATTTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTAACAGATGAAAACCTGACACT
TGGAAAGAGGGACAAGGACTCTGCAAGATCACAGGAAGTGTCAGGAGACT
CAAGATGAGAAGCCAGCTGGCTTGATCTGGCTAGCTTGTGTCTGACGCTC
TTGGCAGGTGCACACAGAGCCGGCTGTCCATCAGAAAAGCGGCGCCATTT
TTCTGGTCATGCTGGAACAATAATAGCAAAATAAGGGTCCTGGAGACCAG
CCTGCTGTTAAGGTTTAATCTGAACCACGCCAAGGGCTTATGCTCTGAAC
GCTGAATCCCCAGCCTGCAGCTTGATCCTGAAGGCTGTGGAGACTCTGAA
GGGGATCCTAGTTTGCAGAAATAAGCAACTAGGGACAGGCTCATTATGGT
CACTTTCCAGATGAGGAGACTGAACACACCTATGTGTATATGTCATGCAT
TTACCACTGGTCACAGGGTGGATAGAGGAGGAAGAAGGATGGCCTGGCAG
TGGATCAACACCATTTGCTGTGACAAATCCACACCTCAGGTTTCTCCAAG
GGTGGGGACCTAATCCATGGAACAATGACAAGCAAAAAGGCCCTGGGTTT
TTTCCCAAATGCCTTCCTCACTGGAGAACCTCAAAAAAAAAAAAAATTGC
CTCCTTACTCCCTTGGGAACGTCAAACTCCCGGGGGGGTGGGGGCCAAAA
AAAAAAAAAAAAACCTGGGGGGACCCTCTGTGTGGGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_k24.b1 MSMg01no375_k24.b1 CHROMAT_FILE:
MSMg01no375_k24.b1 PHD_FILE: MSMg01no375_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:21 2005
         (456 letters)



>mm_chr4_131241969_131242824
          Length = 856

 Score =  849 bits (439), Expect = 0.0
 Identities = 448/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccattgcttatttcttctcacaacgtaatgctgaaagatgcaggggtggggggaa 65
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaattccattgcttaagtcttctcacaacgtaatgctgaaagatgcaggggtggggggaa 597

                                                                       
Query: 66  gccaaccctttgatagattagtaatgtctgccactggtggtgctgcagacacagtggtgc 125
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 accaaccctttgatagattagtaatgtctgccactggtggtgctgcagacacagtggtgc 537

                                                                       
Query: 126 tagctgtgctatgcatttagcaggtactttctaaaaaaacaccaaagctcaaagagagga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tagctgtgctatgcatttagcaggtactttctaaaaaaacaccaaagctcaaagagagga 477

                                                                       
Query: 186 ttttgggtgacataacaggatttgtctctgagataaaggagggtgccagcaaagtggcct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttttgggtgacataacaggatttgtctctgagataaaggagggtgccagcaaagtggcct 417

                                                                       
Query: 246 gcagtgtgcttaggtgctgagtctagtcagccatgctcccacccctgtcctggccctgtg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gcagtgtgcttaggtgctgagtctagtcagccatgctcccacccctgtcctggccctgtg 357

                                                                       
Query: 306 acagcctagctcatttaggagaactttgttagagaaggcgtgagagggcatatacttcct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acagcctagctcatttaggagaactttgttagagaaggcgtgagagggcatatacttcct 297

                                                                       
Query: 366 gattaggtgtgatggtattggctgcttggattctgttctctgaaattaactaaaggtggc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gattaggtgtgatggtattggctgcttggattctgttctctgaaattaactaaaggtggc 237

                                          
Query: 426 aaggacaagaaactgaacaaaacagggaatt 456
           |||||||||||||||||||||||||||||||
Sbjct: 236 aaggacaagaaactgaacaaaacagggaatt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_k24.g1 MSMg01no375_k24.g1 CHROMAT_FILE:
MSMg01no375_k24.g1 PHD_FILE: MSMg01no375_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:21 2005
         (434 letters)



>mm_chr4_131090622_131091455
          Length = 834

 Score =  793 bits (410), Expect = 0.0
 Identities = 428/434 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaacagatgaaaacctgacacttggaaagagggacaaggactctgcaagatcacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaacagatgaaaacctgacacttggaaagagggacaaggactctgcaagatcacagg 260

                                                                       
Query: 61  aagtgtcaggagactcaagatgagaagccagctggcttgatctggctagcttgtgtctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgtcaggagactcaagatgagaagccagctggcttgatctggctagcttgtgtctga 320

                                                                       
Query: 121 cgctcttggcaggtgcacacagagccggctgtccatcagaaaagcggcgccatttttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgctcttggcaggtgcacacagagccggctgtccatcagaaaagcggcgccatttttctg 380

                                                                       
Query: 181 gtcatgctggaacaataatagcaaaataagggtcctggagaccagcctgctgttaaggtt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gtcatgctggaacaataatagcaaaataagggtcctggaggccagcctgctgttaaggtt 440

                                                                       
Query: 241 taatctgaaccacgccaagggcttatgctctgaacgctgaatccccagcctgcagcttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatctgaaccacgccaagggcttatgctctgaacgctgaatccccagcctgcagcttga 500

                                                                       
Query: 301 tcctgaaggctgtggagactctgaaggggatcctagtttgcagaaataagcaactaggga 360
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctgaaagctgtggaaactctgaaggggatcctagtttgcagaaataagcaactaggga 560

                                                                       
Query: 361 caggctcattatggtcactttccagatgaggagactgaacacacctatgtgtatatgtca 420
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 caggctcattacggtcactttccagatgaggagactgaatacacctatgtgtatatgtca 620

                         
Query: 421 tgcatttaccactg 434
           ||||||||| ||||
Sbjct: 621 tgcatttactactg 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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