BAC Information

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BAC

Clone NameMSMg01-376C03
Chromosome4 (Build37)
Map Location 57,900,855 - 57,901,219
singlet/doubletsinglet
Overlap geneAkap2
Upstream geneD730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513
Downstream geneD630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376C03.T7 (MSMg01no376_c03.b1)MSMg01-376C03.TJ (MSMg01no376_c03.g1)
ACCAG481523AG481524
length741779
length of high quality
(start - end)		602 (46 - 647)---
definitionCHROMAT_FILE: MSMg01no376_c03.b1 PHD_FILE: MSMg01no376_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:57 2005CHROMAT_FILE: MSMg01no376_c03.g1 PHD_FILE: MSMg01no376_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAACAAATACACTATAGAATGCATCTACAAACAGTAAAACAGGAG
CTGGAGAGGTGGCTCAGTGGTTCAGAGAACTGGCTGCTTTGCAGAGGACC
CAGGTTCAATTCCCAATACCCACATGGCAGCTTACAGGCACTTGTAACTC
CAGTTCTAGGCCAACGCCTTCTTCTGGCCTCCAAGGGCACTGCATGTACA
TGGTGCACAGACATACAAGCAGCCCAAATATCACACACATAAAATAAAAA
ATAAAATAAAATTTAAAATAAATAAATATAAGTAATACATAAAGAGGATA
CTACCATGTGACTTACAGTTTATAAAAATTTTAAAACATGCAAAAAACCC
AAAGTTTTTCCACATATATATATGTGTGTGTATATATATGTATATATATG
GAGTACTATACATATATAATATGTATTCATATAAAAACATGCACAAACAC
AAATGCCACTGCATTAATTGAGACCCCCCTCAGAGGAGATAAAGAGTGAC
ACACAGAGGAGTGGGAACTGGGAGAAGTGACAAGAGGGCTTGAATTGGAT
CTGCCACATTCAATTCTCTGAGAAACATCCCTTGAATGCTATGGAATTAC
AGGAATGTGGCAGTGAGAGGGGCAGATGCTGCCATCCTAAAGCAGGGGAA
CCTGCCGGTTGGGCTCCGTGCCTTCCGGAAAGCGGGTGCCG

TATATTGGTTATTTTGANGCCAGCAGCTCCGTGAGTGGGGCGCCATCTAG
GTTCCCCGCAACCCCAAGAACAAAAAAGAGCGAACACGAGAATTAATATA
CAAAATCAATAAATAGCAATTGCTTTTTGATTTATTTCCGACCTACGAGA
GCAAGAGCTAAAACATTAGTCTTCTCTCGCAAGCAATACAACCCTCCTTC
TGTGGCGCCTATTCCACCTTATTTTGCTTTTCGCAACCGACAGAGGATCT
GCCACATCGATTTTTGGTAGAGAAAAATATATTTGTTATGTTGAAGAGTT
GTGAATTTAAACGTATAAAGATCAAGCACGTGAGACAAAGATGATTAAAA
ATAGCTTGAATACGCTTTTGCTGTCTAGATACGATGCAAGACTATAGAAG
GGGGACAACACCACGAACATATCCTATAGAAATGGTTAAACTTATCATTA
ATAAAAATTAGTACAAGTGCAATAATATCAAAACATGCACACAAATCGAC
AGCAGGCGTCAGATTCTGTAGACCGATTAAGATGTCAAGTACCAATTTTG
TCAAACGTGTGTACGACTATCTTTCAATGAATGAAANTATCTNCTCCCGC
ATNAGGTTTNNNNNNTCGCACTAGACTCTATGATAGGTATTTAGGANCCT
TCGANACCGATNCTCCGCACCAATAGAANCTTCGTTGNCCGGACCTCATN
GATTAGNANNNGGNTTTATGNANCTNNTNCNAANNTGNNCGACNAGTTTN
ACTNNNTTCTTGGNACCNTTTACGNTNCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_c03.b1 MSMg01no376_c03.b1 CHROMAT_FILE:
MSMg01no376_c03.b1 PHD_FILE: MSMg01no376_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:57 2005
         (602 letters)



>mm_chr4_57900217_57901219
          Length = 1003

 Score =  667 bits (345), Expect = 0.0
 Identities = 362/369 (98%), Gaps = 5/369 (1%)
 Strand = Plus / Minus

                                                                        
Query: 235  atcacacacataaaataaaaaataaaataaaatttaaaataaataaatataagtaataca 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1003 atcacacacataaaataaaaaataaaataaaatttaaaataaataaatataagcaataca 944

                                                                        
Query: 295  taaagaggatactaccatgtgacttacagtttataaaaattttaaaacatgcaaaaaacc 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  taaagaggatactaccatgtgacttacagtttataaaaattttaaaacatgcaaaaaacc 884

                                                                        
Query: 355  caaagtttttccacatatatatatgtgtgtgtatatatatgtatatatatggagtactat 414
            |  |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  c--agtttttccac--atatatatgtgtgtgtatatatatgtatatatatggagtactat 828

                                                                        
Query: 415  acatatataatatgtattcatataaaaacatgcacaaacacaaatgccactgcattaatt 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  acatatataatatgtattcatataaaaacatgcacaaacacaaatgccactgcattaatt 768

                                                                        
Query: 475  gaga-cccccctcagaggagataaagagtgacacacagaggagtgggaactgggagaagt 533
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  gagaccccccctcagaggagataaagagtgacacacagaggagtgggaactgggagaagt 708

                                                                        
Query: 534  gacaagagggcttgaattggatctgccacattcaattctctgagaaacatcccttgaatg 593
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 707  gacaagagggcttgaattggatctgccacattcaattctcggagaaacatcccttgaatg 648

                     
Query: 594  ctatggaat 602
            |||||||||
Sbjct: 647  ctatggaat 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space:   587856
Effective search space used:   587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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