BAC Information

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BAC

Clone NameMSMg01-376H22
Chromosome4 (Build37)
Map Location 55,559,769 - 55,560,166
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376H22.T7 (MSMg01no376_h22.b1)MSMg01-376H22.TJ (MSMg01no376_h22.g1)
ACCAG481798AG481799
length762765
length of high quality
(start - end)		404 (44 - 447)472 (75 - 546)
definitionCHROMAT_FILE: MSMg01no376_h22.b1 PHD_FILE: MSMg01no376_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:24 2005CHROMAT_FILE: MSMg01no376_h22.g1 PHD_FILE: MSMg01no376_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCTTTCCACACTCGACACAATGAAGTTAAATAACGGATCTTAATTGT
TCTCTACGAGAGAGCTGGATTCAATAGCTTGTTTAAGAAACTGTGCACGT
TGGCCCACTCTCGTTCCCTGCAAGGCAATGAACTGGTTCCGAGAGGGCAA
AACCAGCTAAGCAGCCTGCAGCAGTCGCTCTCTTTAACACGGCCCCTCCA
TTCAGACCCCATTTTCATGGACACACTCCACTGTGTTAACTGGCTGCAGC
TGCAATTAGGAGTCGGCAAATCCAGGCATGTGTTTGGGTCCGAGCTGCAT
CCTGTGTGATTCCTCAAATACTTTGGGTTTGGCAGAAGCCGGGACGCATT
CTGTCAAGTTCTTTCTCTCTCTTCATTGTTAAACCCGTGTGTATTCAAGA
GAAATGGGCTCCATCTGATTCTCATTCATTTTCGCTTAACTCGACAAAAA
AGTTGTCTTGGAAGAACCAGAAAATATCCGAGTGGCGAACCCAACTTCTT
TTATGGAAGTCCTATTAGAACCTTTTTTTTCACTCTAAAAAGCCTGAAAT
TCTCCAATGGGCCAAGAATTTCCTTTTTCCAGGCCCTTGCTCTTGTGGAC
CAAACCAAGTTGGCCCCCATCCCCTTTCCTGGTGTTGTCCCCTATTCCGG
AACCCCAGGGGCGCCCTCTTGTTAAAACCGGTTAGGCCCCCCCCCCAAAA
AATGGTTTGACG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGGCCACCAAAGGTATGTAGAGAG
ACCATGTCTCCAAAAAGTAAGTATTTTGAAGTGTTCTCAGGGGCTGGAGA
GATGGCTCAGTGGTTAACAGCACTGACTGCTCTTCTGAAGGTCCTGAGTT
CAAATCCCAGCAACCACATAGTGGCTCACAACCATCCGCAGTGAGATCTG
ATGCTCTCTTCTGGGGTGTCTGAAGACAGCTATAGTGTGCTTAAATAAAT
AGATCTTTTGAAAAAAGAAGAGGAGGAAGGAAGAAGAAAAGGGTTTTCTT
AAAATGTCTGATGGTCCTGTAGATTTGTCAGTCTGTATCTCTTCCATCCC
CATTGAGAACATTTATCCCAGCACTTAAAGGAGGCTGCTCCGGGGGATTT
CATTCCTTAGCATCATCACCACTCTTGCCTTTGGGGCCATTATTAAATAA
AGGTTTCCTAAACAGGGTACTGTGTCACCTTAACAGTAGCTTTGCTAATT
GAGACTGCAGGCGGCATATATATATATATATATATATATATATATATATA
TATATATATAGGNTCGGGCATAAGCGCCCCCNNACCCCCCCTGCCCGCCT
TAATCTTTCCCACTATCATTTCTTCCCTCCTTTCCCAAATGCCCCCCCCT
TGCTAATTGGCTCAGCTTTTGTCACTTTTTATCCTCGCGGGCTTTCTCTC
TCTCCCACGTTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_h22.b1 MSMg01no376_h22.b1 CHROMAT_FILE:
MSMg01no376_h22.b1 PHD_FILE: MSMg01no376_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:24 2005
         (404 letters)



>mm_chr4_55559563_55560366
          Length = 804

 Score =  762 bits (394), Expect = 0.0
 Identities = 397/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctttccacactcgacacaatgaagttaaataacggatcttaattgttctctacga 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaattctttccacacacgacacaatgaagttaaataacggatcttaattgttctctacga 545

                                                                       
Query: 67  gagagctggattcaatagcttgtttaagaaactgtgcacgttggcccactctcgttccct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gagagctggattcaatagcttgtttaagaaactgtgcacgttggcccactctcgttccct 485

                                                                       
Query: 127 gcaaggcaatgaactggttccgagagggcaaaaccagctaagcagcctgcagcagtcgct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcaaggcaatgaactggttccgagagggcaaaaccagctaagcagcctgcagcagtcgct 425

                                                                       
Query: 187 ctctttaacacggcccctccattcagaccccattttcatggacacactccactgtgttaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctctttaacacggcccctccattcagaccccattttcatggacacactccactgtgttaa 365

                                                                       
Query: 247 ctggctgcagctgcaattaggagtcggcaaatccaggcatgtgtttgggtccgagctgca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctggctgcagctgcaattaggagtcggcaaatccaggcatgtgtttgggtccgagctgca 305

                                                                       
Query: 307 tcctgtgtgattcctcaaatactttgggtttggcagaagccgggacgcattctgtcaagt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcctgtgtgattcctcaaatactttgggtttggcagaagccgggacgcattctgtcaagt 245

                                                 
Query: 367 tctttctctctcttcattgttaaacccgtgtgtattca 404
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctttctctctcttcattgttaaacccgtgtgtattca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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