BAC Information

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BAC

Clone NameMSMg01-377F11
Chromosome4 (Build37)
Map Location 48,038,465 - 48,209,713
singlet/doubletdoublet
Overlap geneLOC100040788, Nr4a3, Stx17, Txndc4
Upstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneInvs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377F11.T7 (MSMg01no377_f11.b1)MSMg01-377F11.TJ (MSMg01no377_f11.g1)
ACCAG482446AG482447
length761774
length of high quality
(start - end)		441 (71 - 511)382 (76 - 457)
definitionCHROMAT_FILE: MSMg01no377_f11.b1 PHD_FILE: MSMg01no377_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:29 2005CHROMAT_FILE: MSMg01no377_f11.g1 PHD_FILE: MSMg01no377_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,038,465 - 48,038,905)(48,209,332 - 48,209,713)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTGTTCCTCCAAGAGTCTTTCTTGGTGATGGCCTTTTGGAA
AGATCCTCTTTCACTTCTTACCAACCTGTTCACTCTGTCTACAGCTTCTA
ACACCCACTTAGCACCAGCCAGAAATTCTTTAATATCCCTCTACCTTCTA
GCTCAAAATTCCCAACCCATTTGCCCATTTTTCAGACAGAAACTTACTTT
CTCAGTACAAAAGGAAGACATATCATTAAATGCATATAATCAATGTATCA
GGATTGGGGGAGGGAAGTTGCTGAAAAAATATGTCTATGAGCCCATCCAT
CTCTGGTAGCCTTATTTGGAAAAACGTCTTCACAGGTATCTTTGAGGAGC
AATGGATAAGAGCATCCCCACCTACCCCACAGGACCCTAAATCTAATGAA
GTAGAAAGGCAGAAATGGATTTAAGAGAGACTATAGAGAAAACACCGAAC
AGAAAGGAAGGTACTACATAACCACAGAGGTAGAGGATGCCGTGAGGTCA
CCTCAAGTCCAGGAAAGCCTACCGCATTCAGAGCCCATGTTTGCCATATT
ATGTTCCCTGGAGTTTCCAGAGAGGGACCCGGGTCCCCCACCCACTTATA
GGTATTTTTATCGGAACTCCTTATTGTGAATACTGTTCCTTGTATTTAAG
AATAAACTTTCGTGTGGGTCCCTTCGGTTCCTATTTCCCTCTCTTGTCCC
TTTATCCTTTG

TCCGATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATCACGGACCTGACCCGACTGACA
CAGCCCCAGGAGAGGTAGGACTCCTGTGTTGCCAGTGGGGACTCTTCTGT
GGAGACCGCCTCAGAGGGGACTTGAGCTAGAGTTGCGGCTCCTGATACCT
CTCTGTAGAAATTTGGAGCTGACTAAGACACATTTAGGTTATGCGCCTTT
AAAGTTACTTCTTAAAATGCCAGGTCTCCAGAAAAGCTGTAAAGTGCTGT
GTCTGGTTTCTCATCATCTAAACTGGGGTGACTGGGTATGACGCTGTGGG
GCGTAGCTATACAGGGTTAAATAGAGAAGTGAGAACATAGGATTTGGGAA
AGTAGTTGAGAAAGCAGATCAGTGGACTCCCGTTCAAGCTTGCTTTTGCT
GCTGAATCCGTGCCCTCGCTGTCCTAAAGCACTGCTCTGTCACCTTGTCC
ATCCATGCTAAGGTTCTTCATAGTCGCACTGTTGATAGTGTTCCAACACA
GGGCTCAGGACAGTTTTCCCAGGGTATACCTGAATGTTTTGCTAGTTTTT
ATCACTATTTTTAACTCAACTTTTTCTCCCCCGGCACAATTTCCCGGGGC
TTTGGCGTTTTTCCGATTTTACCCCCCACTCGCTTCTCACCAACTGCCCT
TTTTCGTTTTCTCCTTTTTCTCCCCCTATTTTTACCCCGCCTACTTGGTT
ATTCTGTTTATTCATCCCCGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_f11.b1 MSMg01no377_f11.b1 CHROMAT_FILE:
MSMg01no377_f11.b1 PHD_FILE: MSMg01no377_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:29 2005
         (441 letters)



>mm_chr4_48038265_48039105
          Length = 841

 Score =  814 bits (421), Expect = 0.0
 Identities = 436/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtctttcttggtgatggccttttggaaagatcctctttcacttcttaccaacctgtt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggctttcttggtgatggccttttggaaagatcctctttcacttcttaccaacctgtt 260

                                                                       
Query: 61  cactctgtctacagcttctaacacccacttagcaccagccagaaattctttaatatccct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactctgtctgcagcttctaacacccacttagcaccagccagaaattctttaatatccct 320

                                                                       
Query: 121 ctaccttctagctcaaaattcccaacccatttgcccatttttcagacagaaacttacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaccttctagctcaaaattcccaacccatttgcccatttttcagacagaaacttacttt 380

                                                                       
Query: 181 ctcagtacaaaaggaagacatatcattaaatgcatataatcaatgtatcaggattggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagtacaaaaggaagacatatcattaaatgcatataatcaatgtatcaggattggggg 440

                                                                       
Query: 241 agggaagttgctgaaaaaatatgtctatgagcccatccatctctggtagccttatttgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaagttgctgaaaaaatatgtctatgagcccatccatctctggtagccttatttgga 500

                                                                       
Query: 301 aaaacgtcttcacaggtatctttgaggagcaatggataagagcatccccacctaccccac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 aaaacgtcttcacaggtatctttgaggagcaatggataagagcatccccacctaacccac 560

                                                                       
Query: 361 aggaccctaaatctaatgaagtagaaaggcagaaatggatttaagagagactatagagaa 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaccgtaaatctaatgaagtagaaaggcagaaatggatttaagagagactatagagaa 620

                                
Query: 421 aacaccgaacagaaaggaagg 441
           ||||| |||||||||||||||
Sbjct: 621 aacacagaacagaaaggaagg 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_f11.g1 MSMg01no377_f11.g1 CHROMAT_FILE:
MSMg01no377_f11.g1 PHD_FILE: MSMg01no377_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:29 2005
         (382 letters)



>mm_chr4_48209132_48209913
          Length = 782

 Score =  731 bits (378), Expect = 0.0
 Identities = 381/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcacggacctgacccgactgacacagccccaggagaggtaggactcctgtgttgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 catcacggacctgacccgactgacacagccccaggagaggtaggactcctgtgttgccag 523

                                                                       
Query: 61  tggggactcttctgtggagaccgcctcagaggggacttgagctagagttgcggctcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tggggactcttctgtggagaccgcctcagaggggacttgagctagagttgcggctcctga 463

                                                                       
Query: 121 tacctctctgtagaaatttggagctgactaagacacatttaggttatgcgcctttaaagt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tacctctctgaagaaatttggagctgactaagacacatttaggttatgcgcctttaaagt 403

                                                                       
Query: 181 tacttcttaaaatgccaggtctccagaaaagctgtaaagtgctgtgtctggtttctcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tacttcttaaaatgccaggtctccagaaaagctgtaaagtgctgtgtctggtttctcatc 343

                                                                       
Query: 241 atctaaactggggtgactgggtatgacgctgtggggcgtagctatacagggttaaataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atctaaactggggtgactgggtatgacgctgtggggcgtagctatacagggttaaataga 283

                                                                       
Query: 301 gaagtgagaacataggatttgggaaagtagttgagaaagcagatcagtggactcccgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaagtgagaacataggatttgggaaagtagttgagaaagcagatcagtggactcccgttc 223

                                 
Query: 361 aagcttgcttttgctgctgaat 382
           ||||||||||||||||||||||
Sbjct: 222 aagcttgcttttgctgctgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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