NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTACCTAGCGAGGGGTGGTTGGGGTGGGGATCTGTGTCA
CTGTCTGCTTCCTAGCTTCAGTGAGCCATCCTTGTTCATTCTTCAGGGTG
TATCCCAGGTAAGTCACCTCAGTCCGGCATAACTGTGCCTTTTTAGACAA
AGCCCGGTACCCCAACTCACCTAACTCAGCCAGGATTTTCTGAGTCCCAA
GTTCGCACTCCTCACATGTTTCTGCAGCCACCAGAAGGTCATCTACATAT
TGCAAAACAGTCACCTGGGAAGAGTTGGACCTGAAAGAGGCAAGAATGGC
GATGTACAGCTTCATCAAACAAGACATCTTTGAGATCTAAGACCATATAC
CAGGTTCATTCAGATGGCAGCATACTGAGCAGGTTGTAAGGATTGGGCAT
TGTGGGGTGGATATGCTGAACTCTTTTGTTTACCTCTCTGAGGTCCTGTA
CAAGACGGTAGTCGTTTGTCCAGGTTTCTTTACTGGGAGTAGGGGGGTAT
TCCTAGGAGACTTGCAGGGGACTAGGATCCCTTGTTGGAGCAGTCTGGTG
ATATAGGGGTGTATACCTCCTGAGCTTCCTTGCTCATAGATACTGTCAGA
TCCTAATGGGAGTGGCTCCAGACTTAAGCTCGATCACCATTGGGGGGAGC
TTGTCTTTGCATTCTCATTTCCCCCGGTTTGGCCCAGGCTTGAGGAAATC
AATAAAGGCAA

NGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAATTTGGTTTAGAAAGCTTG
CCTTGCTGAAATACTGAATTGCTGAATTGTTTACTGTTTCATACCCATTG
AATGTTGATGAATAGCCATGTTTCTTACAACATTCTTTTATCAATAACAA
AATTGCCCTATTAATAATTTGTTAAATACTATCTTTACAAGTACTTTAAC
ACTTTTAACACTATATTTAATTCAAATATAGCTCTCAGTTCATCAAGTTA
AACAATATTAGTGTCCATAAATACTTTCAATTTCAAAGAATCCATTTAGT
TTCTTAAATGTGGACCATATTGTAGAGATCGAAAAATAGAAGACTTGAGC
TGAATGAGTTAAACTTAGAATTGCAGAATCATGTCACAATTTGACATTGA
AGACTCCAAGATAGGCAGTGGCTGGATGTTTGAACAGATAGATAGAACCA
ACATTATAATGAACATATGAACGACCTCAGGGGTGGTAATTTGCTAATAC
ATTTCTAGTGTACATACTTGAATTGCAGAGGTGAGGTGGGTTTTTTTGNT
GNTTTGNTTTGNTTTGTTTTGNTTNNNNNNNNNNNNNNNNNNNNNNNNTN
TTNTNTTTTNTNNTTTTNTTNNTNTTTTNNTTTTTNNTTTTTTNTTNTTT
NNNNTTTNNTNNNTTNTTTTTTTTTTNTTTNNNNNTTTTTNTNTT

Query= MSMg01no378_f02.g1 MSMg01no378_f02.g1 CHROMAT_FILE:
MSMg01no378_f02.g1 PHD_FILE: MSMg01no378_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:47 2005
         (524 letters)



>mm_chr4_38361794_38362717
          Length = 924

 Score =  977 bits (505), Expect = 0.0
 Identities = 517/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatttggtttagaaagcttgccttgctgaaatactgaattgctgaattgtttactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatttggtttagaaagcttgccttgctgaaatactgaattgctgaattgtttactgt 260

                                                                       
Query: 61  ttcatacccattgaatgttgatgaatagccatgtttcttacaacattcttttatcaataa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatacccattgaatgttgatgaatggccatgtttcttacaacattcttttatcaataa 320

                                                                       
Query: 121 caaaattgccctattaataatttgttaaatactatctttacaagtactttaacactttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaattgccctattaataatttgttaaatactatctttacaagtactttaacactttta 380

                                                                       
Query: 181 acactatatttaattcaaatatagctctcagttcatcaagttaaacaatattagtgtcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactatatttaattcaaatatagctctcagttcatcaagttaaacaatattagtgtcca 440

                                                                       
Query: 241 taaatactttcaatttcaaagaatccatttagtttcttaaatgtggaccatattgtagag 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatactttcaatttcaaagaatctatttagtttcttaaatgtggaccatattgtagag 500

                                                                       
Query: 301 atcgaaaaatagaagacttgagctgaatgagttaaacttagaattgcagaatcatgtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcgaaaaatagaagacttgagctgaatgagttaaacttagaattgcagaatcatgtcac 560

                                                                       
Query: 361 aatttgacattgaagactccaagataggcagtggctggatgtttgaacagatagatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttgacattgaagactccaagataggcagtggctggatgtttgaacagatagatagaa 620

                                                                       
Query: 421 ccaacattataatgaacatatgaacgacctcaggggtggtaatttgctaatacatttcta 480
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ccaacattataatgaacatatgaacgacctcaggggtggtaatttgctgatacatttcta 680

                                                    
Query: 481 gtgtacatacttgaattgcagaggtgaggtgggtttttttg 521
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 gtgtacatacttgaattgcagaggtgaggtggggttttttg 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)