Query= MSMg01no379_f10.b1 MSMg01no379_f10.b1 CHROMAT_FILE:
MSMg01no379_f10.b1 PHD_FILE: MSMg01no379_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:05 2005
(524 letters)
>mm_chr4_99089016_99089940
Length = 925
Score = 491 bits (254), Expect = e-143
Identities = 263/266 (98%), Gaps = 1/266 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttctc-attacccataattgcccatttatttacacattcagtataattatgaa 62
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggaattcttctcaataaaccataattgcccatttatttacacattcagtataattatgaa 274
Query: 63 attagtataattagcatatgtattactttaaatgtttataatttcttcctttttaaaaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 attagtataattagcatatgtattactttaaatgtttataatttcttcctttttaaaaca 214
Query: 123 attttaaggctatatcatttctctttcccttttcttcttctgaagcctgccatgtaccca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 attttaaggctatatcatttctctttcccttttcttcttctgaagcctgccatgtaccca 154
Query: 183 tttcctcttgctctccttcaaatttatggcctcttttctctttaattgttattaggtagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tttcctcttgctctccttcaaatttatggcctcttttctctttaattgttattaggtagc 94
Query: 243 tatatatatatatatatatatatata 268
||||||||||||||||||||||||||
Sbjct: 93 tatatatatatatatatatatatata 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_f10.g1 MSMg01no379_f10.g1 CHROMAT_FILE:
MSMg01no379_f10.g1 PHD_FILE: MSMg01no379_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:05 2005
(411 letters)
>mm_chr4_98880367_98881177
Length = 811
Score = 779 bits (403), Expect = 0.0
Identities = 409/411 (99%)
Strand = Plus / Plus
Query: 1 tcagaaacccgttgctttttgggagaagagatggctgcttgtgtggagctttgatctaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaaacccgttgctttttgggagaagagatggctgcttgtgtggagctttgatctaat 260
Query: 61 atttataaaagataatatatgggaagccctaatctagttcctggtgtgcacacggcagat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 atttataaaagataatatatgggaagccctaatctagttcctggtgtgcacatggcagat 320
Query: 121 aaatatccgtgtcctactggagtttagaagagaaccagatccaaatggaaaagggggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatatccgtgtcctactggagtttagaagagaaccagatccaaatggaaaagggggaag 380
Query: 181 acagccccaaagacgactctgaaaggagtagaacttagatagactgatatcctggggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagccccaaagacgactctgaaaggagtagaacttagatagactgatatcctggggaca 440
Query: 241 ttttttatcacacgatagcgtgagtcaagtagcgcagcccagtggagatggagaatgggg 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ttttttatcacacgatagcgtgagtcaagtagtgcagcccagtggagatggagaatgggg 500
Query: 301 ttctagtttgtaccacagtcttcatttgaaaccagaggtctgataagaactaacagtatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctagtttgtaccacagtcttcatttgaaaccagaggtctgataagaactaacagtatg 560
Query: 361 ttttaacgcttttatttattttaaagttattttatatttttaatgatatgt 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaacgcttttatttattttaaagttattttatatttttaatgatatgt 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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