BAC Information

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BAC

Clone NameMSMg01-380H18
Chromosome4 (Build37)
Map Location 91,812,480 - 91,812,989
singlet/doubletsinglet
Overlap gene1700011H22Rik
Upstream geneLOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886
Downstream geneLOC68280, LOC620269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380H18.T7 (MSMg01no380_h18.b1)MSMg01-380H18.TJ (MSMg01no380_h18.g1)
ACCAG484849AG484850
length744747
length of high quality
(start - end)		513 (43 - 555)477 (76 - 552)
definitionCHROMAT_FILE: MSMg01no380_h18.b1 PHD_FILE: MSMg01no380_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:34 2005CHROMAT_FILE: MSMg01no380_h18.g1 PHD_FILE: MSMg01no380_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTTTACCAATCGAAATTCTTAAAAGTTCAAAGTTATAAATATTTA
GCTCTGGATGAAGCAGAGCAATGATGTCATAGCTTATGTTGGAGTAGTGG
GTTAGCATTTCTTCAAAATATGGGAGGTATGTAAAAATTGCATATGTTTA
GTTTTGCCATCAGATGATATTGATATTTCCTCACAGCTCTAAAAATTGGG
TTCAAGGTGTATCTATCTGAAGAAAAAGAGCAAACAGAGAAAGGAGATGG
GCTGAAACCCCAAGGTGTCCCATTTACTGTACTCACTGCAATCTTCTGAA
CAAGCTAAAAGAGAATCAGAAAGATCTGATTAGCTTAGACTCGCCCTTAC
TGTGTCACACTAATACCCATTTGACCCCTGCTGTCTATTCACTTCTCACT
ACTCCTAAACCCCTTAGACCTGGATGCTGGTTCCCCTTCTCACCCCATAG
TTCCTGTTCTCTGACATAATTTCAGTGTTGTTTAGGTAGAAATGTCTCAT
TACCAACTTCAGAGAAGTTCTTTATTATTTGTGTCAGTTTTTTCTCCAAG
GTTTGGCGGATCTCCAGAAGATTGCCTTGAATGATAAAGACTCCTTAATG
AGGAATGGAAGTGATACCCTCCATTCAGCGTGATTTTTTCATAATTGAAG
TTCCGTTATATTGCTTTTTCTTTTTCCTGGCCAAATTTTCTTTT

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGAAAGAGGAGGTAGAAAGTACA
GAAGAATCCTTGGTGCTGAATGACAAGGAAACTGTTATGCAGGTACAGCA
GAGCTGATAAATGTTGAAGTCACAGTCTATGATATCATGCAAATGACCTG
TTCAGGATCAATCCAGACTGTGTCCCAGCGCAGAATGGACGAAGTGTACA
TGGGGTTCCACCCCTAACCAAGAAGCTATCTGCCGTGATTTCAACTGGAC
AAAGTAAAATTGATTTCCAGGGGAGTGTCACTCTTTAAAATGCCTTGGAA
ATACCATAATTAGGAGTGTCTGAACAGCACAAAACAAACTCCATGTTTTT
GCATAGGGTTGTTTGTTTAGCTTGCAATTGTTGTTCTTAGTGGTTTTATT
TGGTCTGATTATTTTAATTTTTTAAAGAAAAAGAATAAAATTGAGTAGGT
AGAAAGATGGGGAGTATATGAAAGGAGTCAATGTAATGAAATATATTGTG
TAAAAATTTTGTAAGTAAAATGGAATTCAGGGATAAAATATATTTTGTTA
TTTTTTTAATTATCTACTGTAGAATATGATATGGCCCCTTTATTTATGTG
TTTTGATAGCTCATCAATTTTTAAATTTTTACATTGGTTGACCGACACTC
CCCTTCCTTTATCTTAGTCCCCACCCACACCCTTATAACCCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_h18.b1 MSMg01no380_h18.b1 CHROMAT_FILE:
MSMg01no380_h18.b1 PHD_FILE: MSMg01no380_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:34 2005
         (513 letters)



>mm_chr4_91812277_91813189
          Length = 913

 Score =  940 bits (486), Expect = 0.0
 Identities = 504/510 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctttaccaatcgaaattcttaaaagttcaaagttataaatatttagctct 63
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctctagtaatcgaaattcttaaaagttcaaagttataaatatttagctct 263

                                                                       
Query: 64  ggatgaagcagagcaatgatgtcatagcttatgttggagtagtgggttagcatttcttca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggatgaagcagagcaatgatgtcatagcttatgttggagtagtgggttagcatttcttca 323

                                                                       
Query: 124 aaatatgggaggtatgtaaaaattgcatatgtttagttttgccatcagatgatattgata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatatgggaggtatgtaaaaattgcatatgtttagttttgccatcagatgatattgata 383

                                                                       
Query: 184 tttcctcacagctctaaaaattgggttcaaggtgtatctatctgaagaaaaagagcaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttcctcacagctctaaaaattgggttcaaggtgtatctatctgaagaaaaagagcaaac 443

                                                                       
Query: 244 agagaaaggagatgggctgaaaccccaaggtgtcccatttactgtactcactgcaatctt 303
           |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 444 agagaaaggagatgggctgaaacctcaaggcgtcccatgtactgtactcactgcaatctt 503

                                                                       
Query: 304 ctgaacaagctaaaagagaatcagaaagatctgattagcttagactcgcccttactgtgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgaacaagctaaaagagaatcagaaagatctgattagcttagactcgcccttactgtgt 563

                                                                       
Query: 364 cacactaatacccatttgacccctgctgtctattcacttctcactactcctaaacccctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacactaatacccatttgacccctgctgtctattcacttctcactactcctaaacccctt 623

                                                                       
Query: 424 agacctggatgctggttccccttctcaccccatagttcctgttctctgacataatttcag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agacctggatgctggttccccttctcaccccatagttcctgttctctgacataatttcag 683

                                         
Query: 484 tgttgtttaggtagaaatgtctcattacca 513
           ||||||||||||||||||||||||||||||
Sbjct: 684 tgttgtttaggtagaaatgtctcattacca 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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