BAC Information

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BAC

Clone NameMSMg01-380I21
Chromosome4 (Build37)
Map Location 132,123,575 - 132,124,037
singlet/doubletsinglet
Overlap genePtafr
Upstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8
Downstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380I21.T7 (MSMg01no380_i21.b1)MSMg01-380I21.TJ (MSMg01no380_i21.g1)
ACCAG484903AG484904
length747751
length of high quality
(start - end)		522 (61 - 582)490 (70 - 559)
definitionCHROMAT_FILE: MSMg01no380_i21.b1 PHD_FILE: MSMg01no380_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:40 2005CHROMAT_FILE: MSMg01no380_i21.g1 PHD_FILE: MSMg01no380_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGTCCTTACTTCCTTTGGTGATGAGCAGCAGTGTGGAAGTGTAAGCTGA
ATAAACCCTTTCCTCCCAAACTTACTTCTTGGTCATGATGTTTTGTGCAG
GGATATAAATCCTGACTACTAAGACAATGTGTGTGTGTGTGTTACTATGT
AGACCAAGCCCCGGCCTCATGCTAGCATTAAAGATGTGAGCCACTACATA
AGCAGTCAGAAGACAACTTTCTGAAATCAGTTCTCTCCTCCCACCACGGG
TTCTGGGATGCTCAATATGTCAGGTCTCTGTATATAGAGGGTTGGTCTGG
TAATGTTATATATTCGAATGTTAAATACTGGCCCCTCCCAAATCTGATTG
ATGTCAGGCCTTCCTATGTAGGGGGTTGGTCTGGTACTGCTATGTATTTG
AATGTTAAGTACTGGCCCCCAAAATCTGATTGCCCCCACCATGAGGAAAT
TCTCACATATACCAGCTTTTGTTGTGCAAACTTTGCTCCCCAAATTAATT
GGTTGATAAAAGGCTAAAACCTGTGACTGGGCAATAGATAGAGGTAGGTG
GGTTTTCTATTACTTGGCTAGGGATTGTATGTTGGAAAAAAGATTAAGTA
TATTTCTACCCNCTCTCCCTTTTCTTTTTTTACTCTTTTTCCCCGTTCCC
ACCTTTTTTTCCCCCCCNCTTTTTTTTCTCCTTCTTTCTCCCTCCTC

AATGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCCAACCTGGTCTACAGAGCAAGTTCTG
GAACAGTGATGTCTATACAGAGAAAACCAAAAAGCCAAACCAACCAATAA
TAATAATAATAATAATTAATATTAATAATTAGCCTTTCTATGGCCAGCCC
AGCCTGATCTACATAGCAAGTTGGGGGCCAGCCTGGATTGCACAAGATAC
TACCTCAATAAAATAAAATAAAATTATAAATATAAATAAATAAAATCAAA
ATCTCCCTATGGAGTATTGATACCGAATCTACAGAGTCTTTCCCCCATGC
AACACGATTCACAAATTACCAGATTACTCTAGGAGCTGAAAGGATGTTTG
TGCAATGATCCAGATATCTCTCCCAGCAGGCTTAGGACCTGGGTTTTTCC
TAGGGCTGAGCTATTGGGGAGGGGGGTGCATCTGTGGGCATCAAACCCTT
CCAGGAAGGAGATTTCCAGGAACCCGGGTGTCCTTTTTTTCTCTTCCTCT
TCTCTGTTTTGGGCGTGGTCCAGCTCTGTCATGGCAACTGACAGACTTTT
GTCATCACAGAGATTCCAAGGNTGTCTAGAGTGCCAACATGGCGTCCAGA
CCAGCTGTCTGACCTCCCTGGTCTCCGGGAATTTCAATCTTTTTGCAGAA
ACACTTGTGAAAACGGCAGGACAAAAGGTGTCGCACCTTACAATGTCTTA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_i21.g1 MSMg01no380_i21.g1 CHROMAT_FILE:
MSMg01no380_i21.g1 PHD_FILE: MSMg01no380_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:40 2005
         (490 letters)



>mm_chr4_132123148_132124037
          Length = 890

 Score =  878 bits (454), Expect = 0.0
 Identities = 462/466 (99%), Gaps = 3/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 25  agttctggaacagtgatgtctatacagagaaaaccaaaaagccaaaccaaccaataataa 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 890 agttctggaacagtgatgtctatacagagaaaaccaaaaagccaaaccaacc---aataa 834

                                                                       
Query: 85  taataataataattaatattaataattagcctttctatggccagcccagcctgatctaca 144
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 833 taataataataattaatattaataataagcctttctatggccagcccagcctgatctaca 774

                                                                       
Query: 145 tagcaagttgggggccagcctggattgcacaagatactacctcaataaaataaaataaaa 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tagcaagttgggggccagcctggattgcacaagatactacctcaataaaataaaataaaa 714

                                                                       
Query: 205 ttataaatataaataaataaaatcaaaatctccctatggagtattgataccgaatctaca 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttataaatataaataaataaaatcaaaatctccctatggagtattgataccgaatctaca 654

                                                                       
Query: 265 gagtctttcccccatgcaacacgattcacaaattaccagattactctaggagctgaaagg 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gagtctttcccccatgcaacacgattcacaaattaccagattactctaggagctgaaagg 594

                                                                       
Query: 325 atgtttgtgcaatgatccagatatctctcccagcaggcttaggacctgggtttttcctag 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atgtttgtgcaatgatccagatatctctcccagcaggcttaggacctgggtttttcctag 534

                                                                       
Query: 385 ggctgagctattggggaggggggtgcatctgtgggcatcaaacccttccaggaaggagat 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggctgagctattggggaggggggtgcatctgtgggcatcaaacccttccaggaaggagat 474

                                                         
Query: 445 ttccaggaacccgggtgtcctttttttctcttcctcttctctgttt 490
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttccaggaacccgggtgtcctttttttctcttcctcttctctgttt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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