Query= MSMg01no380_i23.b1 MSMg01no380_i23.b1 CHROMAT_FILE:
MSMg01no380_i23.b1 PHD_FILE: MSMg01no380_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:40 2005
(504 letters)
>mm_chr4_150699630_150700533
Length = 904
Score = 861 bits (445), Expect = 0.0
Identities = 482/509 (94%), Gaps = 25/509 (4%)
Strand = Plus / Minus
Query: 1 tttataatcctgagtggcttggcttcagaagtatttttagcgatgggaagttgaatgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tttataatcctgagtggcttggcttcagaagtatttttagcgatgggaagttgaatgtca 645
Query: 61 acttgaggacacttttccccaggagcacccctgccctctgtacacattgctgagtccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 acttgaggacacttttccccaggagcacccctgccctctgtacacattgctgagtccaga 585
Query: 121 gcacagcataatcccagctgatcccctgggagagagagatgagcattggctgtggacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gcacagcataatcccagctgatcccctgggagagagagatgagcattggctgtggacatg 525
Query: 181 gaagcacagtgagctctgtcttccagagctttctctaatcctcctgctgttctttctttc 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 524 gaagcacagtgagctctgtcttccagaggtttctctaatcctcctgctgttctttctttc 465
Query: 241 cttttgagatc-----ttttttgcttgggattagggagagatccaacactgatggacaga 295
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttttgagatcacccg-----tgcttgggattagggagagatccaacactgatggacaga 410
Query: 296 ggtgatgtgactcacttctgtggaaagcactgtgcctgtaggtgtggtcccagcaggtgt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggtgatgtgactcacttctgtggaaagcactgtgcctgtaggtgtggtccca-------- 358
Query: 356 ggcccctgcaggtgtgatcctagtaggtgtggtcccagcaggtgtggtcccagcaggtgt 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 -------gcaggtgtgatcctagtaggtgtggtcccagcaggtgtggtcccagcaggtgt 305
Query: 416 gatccctgcaggtgtggtcccagcaggtgtggtcccagcaggtgtggtcccagcatgtgt 475
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 304 gatccctgcaggtgtggtcccagaaggtgtggtcccagcaggtgtggtcccagcatgtgt 245
Query: 476 ggtcccagcaggtgtagtcccagcaggtg 504
|||||||||||||||||||||||||||||
Sbjct: 244 ggtcccagcaggtgtagtcccagcaggtg 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_i23.g1 MSMg01no380_i23.g1 CHROMAT_FILE:
MSMg01no380_i23.g1 PHD_FILE: MSMg01no380_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:40 2005
(169 letters)
>mm_chr4_150463176_150463746
Length = 571
Score = 311 bits (161), Expect = 1e-89
Identities = 168/171 (98%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 1 cccacagaaaccctgagggaatccgacaaaacacccacacacccccacagccacaccact 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccacagaaaccctgagggaatcagacaaaacacccacacacccccacagccacaccact 260
Query: 61 acaccaccaccactcagggaagacaccggaagtggctatgatgtaatataagttgggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccaccaccactcagggaagacaccggaagtggctatgatgtaatataagttgggggg 320
Query: 121 gggg--aagattcgagaaaggaggcaggagggtgtaagctcccttatagag 169
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggggaagattcgagaaaggaggcaggagggtgtaagctcccttatagag 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 571
Length adjustment: 8
Effective length of query: 161
Effective length of database: 563
Effective search space: 90643
Effective search space used: 90643
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
