GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATCACTCTGT
TGCCAAGCTGGCCTCGTACTCATAGAGATTCCACCTGCCTCTGCCTCCTG
TCCTGAGTGCTGGGATTAAGGGCGGGGGCCTTATTAAATTAAATTAAATT
AAATTAAATTAAATTAAATTATTTTTATTGGGTTACTTTTCTTCTAAAAG
CTTTAAAGGGCATGGTGGTGCACCCTTGTAATCCCAGAATATTGAAGACA
GAAGGCATCTGGGGCTACAGAGCATGAGAGAAAGGGGGAGGAAGGGAAGA
AGGAAGTTTTTTTAGAGAGGGAAGAAGCCCCNCNCCCCCCCCCCCCCCTC
GCCGCACCGCCCCCCAGGGCGCACCTTTTTCCTCATTTATTTTTATTATA
TTATCCCCCCCCGTGTGATATTAATATTTTTTAACGACATTTTCTTTCTA
TTCTAACTTTATCCCCTCACCCCCCTACTCATCTAATTTTTCCATCTCAC
GCTCCCGTTTCGATATTACCCTTCTGTCAATCCCTATTTTTTATGCCATC
TTTTTGTTGTTTGTGTTCCTCGCGTCGTTTTACTCATGTTTTAGGACGCT
ATCATAATCTTTCGTCTTTGTGTGCAATGTGCCGTGTCTTGTGTTTTTGT
GTTCTCGCAGTCTGCTTTTCCTTAAAATATTTCTTGTTTTTTTTCCTGTC
ACTCCCGCCTTTTTTGTCTTTTATCCCTTTTGCCACCGTTCCCCCCCCCC
TCTTTTTCCCGCCCTTTCGTTTTCCTCCCGCGCTCTATTCCCCCCCCCTT
G

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGCTGCCTATACAGTGTTTATGCCTTACCAAACTCTCTG
GAGAATAGTGGCCCCTAAGATGACTGGTGGCCTCCTACCCAGCAAGCCCT
TCTGGGTAGCCTTCTTAGAGACTGGCCTCTGAGAAACCCATTTCAGGTGC
TTAGGCCTCAGAGGATGCTGGGAAACTGTAATATTGACCAGCATACCTGT
AACTCCATTGCACATCGTCAAGGGGACACGTCCTAGGCAAAAGGTGGCCA
GCTGTGTTTTTTGCTAACACAGGAATCTCCATCTCCAACCACTCTCTGCT
GGAGGCCAGCCCTGCCCCTCTGAGGACCAGAGTCACTAGTTTTTAAACTC
ACTCGATACATCTTTACAGTTGGCTCCACTCAGGTTTAAATAACCCAGAC
TGCTGGGTTGTTGTTGTTGTATTTTGGTTGTTTTAATCTTTGTTGTTGTT
TTAAGACAGTGTTTTACTATGTATGGCTGGCTGGTGTGGAGCTCACATAG
ATCCATCTACCTCTGTCTCCTGAGTGCTGGGATTATAGGATAACTCCTCC
TGCGGTGCCTATTGTATCCTCAAGTTTCACAATTCCGCGGTTTTCTTTGC
CCCCCATCCCCCGCCCGTTTACCTGTAGCCGTCATCCCACTCATCCCCGG
TCTTTGTCACCCCCCTTGTTCTGCTCCGGTTACTAATGCCACTTTTCCCC
CCCCGCCTCTCGCCCCG

Query= MSMg01no380_m11.g1 MSMg01no380_m11.g1 CHROMAT_FILE:
MSMg01no380_m11.g1 PHD_FILE: MSMg01no380_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:57 2005
         (431 letters)



>mm_chr4_44566687_44567514
          Length = 828

 Score =  673 bits (348), Expect = 0.0
 Identities = 409/446 (91%), Gaps = 31/446 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgcctatacagtgtttatgccttaccaaactctctggagaatagtggcccctaagat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agctgcctatacagtgtttacgccttaccaaactctctggagaatagtggcccctaagat 675

                                                                       
Query: 61  gactggtggcctcctacccagcaagcccttctgggt------------------agcctt 102
           ||||||||||||||||||||||||||||||||||||                  ||||||
Sbjct: 674 gactggtggcctcctacccagcaagcccttctgggtgcttagcctccagaggacagcctt 615

                                                                       
Query: 103 cttagagactggcctctgagaaacccatttcaggtgcttaggcctcagaggatgctggga 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cttagagactggcctctgagaaacccatttcaggtgcttaggcctcagaggatgctggga 555

                                                                       
Query: 163 aactgtaatatt-gaccagcatacctgtaactccattgcacatcgtcaaggggacacgtc 221
           |||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 554 aactgtaatattag-ccagcatacctgcaactccattgcacattgtcaaggggacacgtc 496

                                                                       
Query: 222 ctaggcaaaaggtggccagctgtg----ttttttgctaacacaggaatctccatctccaa 277
           ||||||||||||||||||||||||        ||||||||||||||||||||||||||||
Sbjct: 495 ctaggcaaaaggtggccagctgtgcagc----ttgctaacacaggaatctccatctccaa 440

                                                                       
Query: 278 ccactctctgctggaggccagccctgcccctctgaggaccagagtcactagtttttaaac 337
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 439 ccactctctgctggaggccagccctgcccctctgagaaccagagtcactagtttttaaac 380

                                                                       
Query: 338 tcactcgatacatctttacagttggctccactcaggtttaaataacccagactgctgggt 397
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 379 tcactcgatacatctttacagttggctccactcaggttcaaataacccagaccgctgggt 320

                                     
Query: 398 tgttgttgttgtattttggttgtttt 423
           |||||||||   ||||||||||||||
Sbjct: 319 tgttgttgt---attttggttgtttt 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 828
Length adjustment: 9
Effective length of query: 422
Effective length of database: 819
Effective search space:   345618
Effective search space used:   345618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)