BAC Information

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BAC

Clone NameMSMg01-380M14
Chromosome4 (Build37)
Map Location 138,566,816 - 138,765,469
singlet/doubletdoublet
Overlap geneTmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186
Downstream genePqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380M14.T7 (MSMg01no380_m14.b1)MSMg01-380M14.TJ (MSMg01no380_m14.g1)
ACCAG485080AG485081
length743746
length of high quality
(start - end)
530 (64 - 593)298 (314 - 611)
definitionCHROMAT_FILE: MSMg01no380_m14.b1 PHD_FILE: MSMg01no380_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:57 2005CHROMAT_FILE: MSMg01no380_m14.g1 PHD_FILE: MSMg01no380_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,764,940 - 138,765,469)(138,566,816 - 138,567,113)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAGAGGACCGCGGAAANCAGC
TCTTCCTGTCCGGGAACCTCAAGCCATCACCACAGGGAAGAGCAGATACC
ATTTACTGAGCACTTACTATGTCTCAGTAATGTGACCCATGCTCCCTCAT
TACTGACACTGTAGGCCTGACTACATGCTAGGTAAAACACAGGCATTCCC
TGCTTCATCTCATCTGACTGGCTGTAATGGGGAGGAAGCGGTCCAGGGCA
CTGAGCCCAAAGATGCAAAACTCAAAAGAAAAGGGGCAGGATTTAAATTC
AGACAGCATGTTTTGAGAGCCAAGGCTCACACAGTCAAGAACAGCTTGTT
GCTAAGGCAGAGAAAACACTAGCCACACCCATTCAGACCTGGGGATGTGT
GGAGGAAAACATCAGATATGAAGACAGATCTGTGCTCCTGGGCCCCAGTG
GGAAGGAGGAAGGGGCCTAGAGGTGGGTCTTGACTCCCTCAGCTTCACCC
CACCAGCTGCAGGCTTCCTGAAGGGGATCACTGAGAGCCATGTGGGAGTA
AGAGTGCACACACACAGCCTGAGTTCCTACTTCCTTTCTGAGCAAATAAG
CTCACTGCATACAGAGGTCAGAGTCCCGTGCTCCCTCACCACCAGAGTGC
CCTCCCAGGCAACAAGGTGTACAGAGGGACCCCCTATATGAAAGACATCT
TGCAACTCTGGAACCTGGAGGGATTCCAGCGGTCTTATCTCCA
GTGGGTAGCCTGGGGGNCGCCTGGTCAAAACATGAGGTGAACTATAGAAG
TACCCAAAAAATTCCACCTGAGGGATCTCTGTCCATCTCAAGCCCCCATC
CCACGTAGAACCCATGTGGTGAGGTAGACAGAGCATTAGACAATGAGTCC
CAGTCACCCTGACTCACCACGTGACCTTAGCAAGTCACCTGCCACCCTCT
CTGGGCTTGGCTGCGGTTGCAAGAAGAGATGGTTGTTATTGGTGCTAGAT
GTGTGACCACCATCCAGTGGTCCTCCACCATCCGGTGGTCCTGAAAACTC
CACTTCCCNCNAGCTTTTATGACACTTTCTCTAACTACGATATCCCTGGA
TACAAAATGGCTTTCAGGATAGTTCAACATCACCACCCCAGGGTCACTAC
AGAAAAGAATGTAATCACAGAAGAAAATACTCAGCCCAGGCTGGCACACA
GCAAGGGCTTGATAGACGTGAACCCTCCCCTGCCCTCATAAACCCCATGC
CATGTGTGGTCAGGGATGTGAGGGATATGGGGAGATAGCTCAGTCAGCCA
AGCGCTCACCGAGGAAGCACTGGGCCTATGGTTGATCCCAGAACCAGAAA
AGGCTGGTTGTGGGGGTGCACACTTGTAATCCCAGCACTTTTGATGCAGA
AATGGGTTGGTCTCTGGTTTTGCTAGTTAGCCAGCCTGACCAGAATGGTG
AGTTTTAAGCCACTGAGAGATCCCATCTTAAATTAAAAATAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_m14.b1 MSMg01no380_m14.b1 CHROMAT_FILE:
MSMg01no380_m14.b1 PHD_FILE: MSMg01no380_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:57 2005
         (530 letters)



>mm_chr4_138764676_138765605
          Length = 930

 Score = 1009 bits (522), Expect = 0.0
 Identities = 528/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacctcaagccatcaccacagggaagagcagataccatttactgagcacttactatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gaacctcaagccatcaccacagggaagagcagataccatttactgagcacttactatgtc 735

                                                                       
Query: 61  tcagtaatgtgacccatgctccctcattactgacactgtaggcctgactacatgctaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcagtaatgtgacccatgctccctcattactgacactgtaggcctgactacatgctaggt 675

                                                                       
Query: 121 aaaacacaggcattccctgcttcatctcatctgactggctgtaatggggaggaagcggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aaaacacaggcattccctgcttcatctcatctgactggctgtaatggggaggaagcggtc 615

                                                                       
Query: 181 cagggcactgagcccaaagatgcaaaactcaaaagaaaaggggcaggatttaaattcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagggcactgagcccaaagatgcaaaactcaaaagaaaaggggcaggatttaaattcaga 555

                                                                       
Query: 241 cagcatgttttgagagccaaggctcacacagtcaagaacagcttgttgctaaggcagaga 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagcatggcttgagagccaaggctcacacagtcaagaacagcttgttgctaaggcagaga 495

                                                                       
Query: 301 aaacactagccacacccattcagacctggggatgtgtggaggaaaacatcagatatgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaacactagccacacccattcagacctggggatgtgtggaggaaaacatcagatatgaag 435

                                                                       
Query: 361 acagatctgtgctcctgggccccagtgggaaggaggaaggggcctagaggtgggtcttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acagatctgtgctcctgggccccagtgggaaggaggaaggggcctagaggtgggtcttga 375

                                                                       
Query: 421 ctccctcagcttcaccccaccagctgcaggcttcctgaaggggatcactgagagccatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctccctcagcttcaccccaccagctgcaggcttcctgaaggggatcactgagagccatgt 315

                                                             
Query: 481 gggagtaagagtgcacacacacagcctgagttcctacttcctttctgagc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gggagtaagagtgcacacacacagcctgagttcctacttcctttctgagc 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no380_m14.g1 MSMg01no380_m14.g1 CHROMAT_FILE:
MSMg01no380_m14.g1 PHD_FILE: MSMg01no380_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:57 2005
         (298 letters)



>mm_chr4_138566616_138567313
          Length = 698

 Score =  553 bits (286), Expect = e-162
 Identities = 295/298 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttatgacactttctctaactacgatatccctggatacaaaatggctttcaggatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttatgacactttctctaactacgatatccctggatacaaaatggctttcaggatagt 260

                                                                       
Query: 61  tcaacatcaccaccccagggtcactacagaaaagaatgtaatcacagaagaaaatactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaacatcaccaccccagggtcactacagaaaagaatgtaatcacagaagaaaatactca 320

                                                                       
Query: 121 gcccaggctggcacacagcaagggcttgatagacgtgaaccctcccctgccctcataaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccaggctggcacacagcaagggcttgatagacgtgaaccctcccctgccctcataaac 380

                                                                       
Query: 181 cccatgccatgtgtggtcagggatgtgagggatatggggagatagctcagtcagccaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatgccatgtgtggtcagggatgtgagggatatggggagatagctcagtcagccaagc 440

                                                                     
Query: 241 gctcaccgaggaagcactgggcctatggttgatcccagaaccagaaaaggctggttgt 298
            |||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcaacgtggaagcactgggcctatggttgatcccagaaccagaaaaggctggttgt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)