Query= MSMg01no381_c07.b1 MSMg01no381_c07.b1 CHROMAT_FILE:
MSMg01no381_c07.b1 PHD_FILE: MSMg01no381_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:27 2005
(466 letters)
>mm_chr4_13686255_13687121
Length = 867
Score = 723 bits (374), Expect = 0.0
Identities = 443/470 (94%), Gaps = 10/470 (2%)
Strand = Plus / Plus
Query: 6 gaattctggtcttctcaactgctgggccatctttccagcctcattag-gggaatcttgga 64
||||||||||| ||| ||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct: 199 gaattctggtcatcttaactgctgggctatctttccagcctcattagtggg-atcttgga 257
Query: 65 agcgagagtaagttggcatttaagttgccttgagacaggatttcccaaggcctggttgct 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggcgagagtaagttggcatttaagttgccttgagacaggatttcccaaggcctggttgct 317
Query: 125 cttattggtcaacagtgctttacaaggcaagagaggtaagagtactggggtgaagaggga 184
||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||
Sbjct: 318 gttattggtcaacagtgctttataaggcaagagagttaacagtactggggtgaagaggga 377
Query: 185 gtggggttgtgagaggcattaacaactagctgcaaaagaaaggttgcgaggcaatgagtg 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 378 gtggggttgtgagaggcattaacaactagctgcaaaagaaaggttgcaaggcaatgagtg 437
Query: 245 cagagtaagagcaaaaggaccatttgtagataatattcttggttgccttgggcgccattt 304
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |
Sbjct: 438 cagagtaagagcaaaaggaccatttgtagataaaacacttggttggcttgggcgccatct 497
Query: 305 tcttgggaagtagcaggaagagtcccatccctcccccgcccc--gccccct------gtg 356
||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct: 498 tcttgggaagtagcaggaagagtcccatccctccccccccccccgccccccccccccgtg 557
Query: 357 gggccttgtatctctttcccactgtaaagctcaaacagttcaacttgtataataaatttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gggccttgtatctctttcccactgtaaagctcaaacagttcaacttgtataataaatttg 617
Query: 417 cctctctagttgaacttctcttgaacaacagacaccatcatgaagcaaat 466
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttctctagttgaacttctcttgaacaacagacaccatcatgaagcaaat 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space: 390792
Effective search space used: 390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_c07.g1 MSMg01no381_c07.g1 CHROMAT_FILE:
MSMg01no381_c07.g1 PHD_FILE: MSMg01no381_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:27 2005
(531 letters)
>mm_chr4_13875277_13876207
Length = 931
Score = 669 bits (346), Expect = 0.0
Identities = 361/366 (98%)
Strand = Plus / Minus
Query: 166 ggagcagctgctgccatcttgtgaccacatggaccctaaaaatgaagcaaaaacatggaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ggagcagctgctgccatcttgtgaccacatggaccctaaaaatgaagcaaaaacatggaa 872
Query: 226 gaaagtatggccaagctgggcataagatccagacgagttactatatccaatatgtaagct 285
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 871 gaaagtatggccaagctgggcataagacccagacgagctactatatccaatatgtaagct 812
Query: 286 gctgaattcagatgcacttggatttagtcctttttagtttctcagttatatgaatcaata 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gctgaattcagatgcacttggatttagtcctttttagtttctcagttatatgaatcaata 752
Query: 346 aaatacttttctttgtataatatcaacctttgcctcctgagaaatagagctctaaaatgg 405
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aaatacttttctttgcataatatcaacctttgcctcctgagaaatagagctctaaaatgg 692
Query: 406 agcaataggagcataaagccatgtgcttaactggcacatgggtgtcagttccgtggctaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agcaataggagcataaagccatgtgcttaactggcacatgggtgtcagttccgtggctaa 632
Query: 466 ctctctttgttcaacagttgcaagattgatcaaggcgtgatgactgaataccatcaatcg 525
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 631 ctctctttgttcaacagttgcaagattgatcaaggcgtgctgactgaataccatcaatca 572
Query: 526 ttgtgc 531
||||||
Sbjct: 571 ttgtgc 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
