Query= MSMg01no381_d14.b1 MSMg01no381_d14.b1 CHROMAT_FILE:
MSMg01no381_d14.b1 PHD_FILE: MSMg01no381_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:33 2005
(496 letters)
>mm_chr4_68582345_68583239
Length = 895
Score = 891 bits (461), Expect = 0.0
Identities = 485/493 (98%), Gaps = 1/493 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtttgtttacataaaaagcagctagaaattctaaataatccccaggaccctc 63
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatttgtttagataaaaagcagctagaaattctaaataatccccaggaccctc 263
Query: 64 tgtgttgggaattttttagcttgccatgaccaactaccagtgagtgccatgtagcagttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgttgggaattttttagcttgccatgaccaactaccagtgagtgccatgtagcagttg 323
Query: 124 ctttattacataactgacctgcttcagtagtcgggtatactaaggcacttctcatgagct 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttattacatagctgacctgcttcagtagtcgggtatactaaggcacttctcatgagct 383
Query: 184 ggacattctctcttagacatgactgattccttaactctttgatctgtttctatgaagaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggacattctctcttagacatgactgattccttaactctttgatctgtttctatgaagaca 443
Query: 244 tgctaaatttcctgaggtgagaaatggtctaaggtcatccaatctagccatctatcttca 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgctaaatttcct-aggtgagaaatggtctaaggtcatccaatctagccatctatcttca 502
Query: 304 agaagtgcagaattcttgctcagtgatatgatgtttatcaccatgatgatgcatagagga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 503 agaagtgcagaattcttgctcagtgatatgatgtttatcaccatgatgatgcagagagga 562
Query: 364 ttcaaaggactttcttcaggaactgctataattttggtacgttcacaaaattctctggca 423
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 563 tccaaaggactttcttcaggaaccgctataattttggtacgttcacaaaattctctggca 622
Query: 424 tttcacttgagactggtttgctgtccaagggagtcagttcttgtgaaaactggcatggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 623 tttcacttgagactggtttgctgtccaagggagtcagttcttgtgaaaactggcaaggag 682
Query: 484 gagtaaattctct 496
|||||||||||||
Sbjct: 683 gagtaaattctct 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_d14.g1 MSMg01no381_d14.g1 CHROMAT_FILE:
MSMg01no381_d14.g1 PHD_FILE: MSMg01no381_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:33 2005
(507 letters)
>mm_chr4_68721347_68722253
Length = 907
Score = 870 bits (450), Expect = 0.0
Identities = 462/468 (98%), Gaps = 4/468 (0%)
Strand = Plus / Minus
Query: 1 caaatgaaatgtccaagaaaggtagaaggtacaaaaaaatatagatttcaaagacaggct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 468 caaatgaaatgtccaagaaaggtagaaggtacaaaaaaatatatatttcaaagacaggct 409
Query: 61 atatataaaggacacatacctatggtggtcatgatatttacgatgctcttaatcatgatt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atatataaaggtcacatacctatggtggtcatgatatttacgatgctcttaatcatgatt 349
Query: 121 tgcgaaaaaataattttaaaaagcataagatagccccaggtttcacatagtcccatgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgcgaaaaaataattttaaaaagcataagatagccccaggtttcacatagtcccatgaaa 289
Query: 181 atctatcatgtactgttacagttatagactggagacttaagaagggtgttacaaagatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atctatcatgtactgttacagttatagactggagacttaagaagggtgttacaaagatac 229
Query: 241 ccaagcaaggtattcagtag----tttatttatttcttcattattttttaattaggtatt 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 228 ccaagcaaggtattcagtagtttatttatttatttcttcattattttttaattaggtatt 169
Query: 297 ttcttcatttacatttccaatgctaccccaaaagtctcccaaaccctcaccccccacttc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttcttcatttacatttccaatgctaccccaaaagtctcccaaaccctcaccccccacttc 109
Query: 357 cctatccccccactctcacttcttgtccctggcattcccctgtactgaggcatataaagt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cctatccccccactctcacttcttgtccctggcattcccctgtactgaggcatataaagt 49
Query: 417 ttgcatgaccaatgggcctctctttccactgatggccgactaggccat 464
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 ttgcatgaccaatgggcctctctttccactgatggccgactaggccat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
