BAC Information

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BAC

Clone NameMSMg01-381F13
Chromosome4 (Build37)
Map Location 72,454,414 - 72,454,798
singlet/doubletsinglet
Overlap genenone
Upstream geneTle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381F13.T7 (MSMg01no381_f13.b1)MSMg01-381F13.TJ (MSMg01no381_f13.g1)
ACCAG485509AG485510
length733805
length of high quality
(start - end)
477 (59 - 535)392 (70 - 461)
definitionCHROMAT_FILE: MSMg01no381_f13.b1 PHD_FILE: MSMg01no381_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:43 2005CHROMAT_FILE: MSMg01no381_f13.g1 PHD_FILE: MSMg01no381_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNCGCGGAATTCATT
GTTTTCAATTGCTGAGTAGTACTCCATTATATAATGTACCACGTTTTCTG
TATCCATTCCTCTGTTGAAAGACATCTGGATTCTTTCCAGGTTCTGGCTA
TTATAAATAAGGCTGCTATGAATATAGTGAAGAATGTGTCCTTATAACAT
GTTGGAGCATCTTTTGGGTGTATGCCCAGAAGTGGTATAGCTGGGTCCTC
AGGTAATACTATGTCCAATTTTCTGAGGAACCTCCCAACATATTTCCAGC
ATGGTTGTATCTTCTTGTAATCCCACCAGCAATGGAGGAGAATTCCTCTT
TCTCCACATCTTCGCCAGCATCTGCTGTCACCTTAGTTCTTGATTTTAGT
CATTCTGACTGTTGTGAGGTAGAAACTCAGGGTTGTTTTGATTTGTGTTT
TCCTGTTGACTAAGGATGTTGAACATTTCTTTGTTTGTTTGCTTGTTTGT
TTGTACATTTTTTATTAGATATTTTCTTCCTTTATATTTCAAATGCTATC
CCCAAAGCCCCCTATAACTTCCCCCTGGCCTGGTCCCCAAACCACCCACT
CCCGCTTTCCTGGNCCTGTGATTCCCCCTGTATTGGNCGTATATTAACTT
TTGTCAAACCCAAAATCTCTCCCCCCCCTGGAGGCCGAATAAAAAACCTT
TGCCCATATTGCACCCCAAAAATTATTCATTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGTTTCTCTTTGTTAAATGGAAGTTTTTTT
TTTTTTTCAAAGCCTGGTTAATATCAGATCACATATAAAAAACTGATATT
CTGTCCCCCAAATGCTCAGTAATGATCCTGGATTAGAAAAAAAAAAAAGA
GGGGCAATTTCAATTCAATGAATGGTAAGCAAGGAAGCATGGGACAAATG
GGTAGATCTTCTCTGGCTAGTGTGTTGACTTTGCTACCCAAACTCTGCCT
AGGAATGTGAGAATGGGGTATTGGGTCAAGGTTTTGGACACTCTGCAGGC
TATGCAAGTGCACTGGCTATGTGATCAAGACTAGGTCTGAGGTTCATCTT
ACTAGATGTTGTGTTAGAGTACAGATAGTCAACCTATAATTGGTCTGGGA
GGTGGAGGTAGTATATTTTGGTGTGNATTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNN
NNNNNNTNNTNNNNNNTTTTNTTTTTTTTNTTTTTTTTTTTNNNTTTTTT
TTNNTTNNNNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNNNNN
NNNNTNNTTTTTTTTTTNTTTTNTTTTTTTTTTTTNTTTTTTTNTTTTTT
TTTTTNNNNNTTNTTTTTTTTTNNNTTTTTTTTTTTTTTNNNTTTNNTTT
TNTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_f13.g1 MSMg01no381_f13.g1 CHROMAT_FILE:
MSMg01no381_f13.g1 PHD_FILE: MSMg01no381_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:43 2005
         (392 letters)



>mm_chr4_72454214_72454998
          Length = 785

 Score =  638 bits (330), Expect = 0.0
 Identities = 375/392 (95%), Gaps = 7/392 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttctctttgttaaatggaagttttttttttttttcaaagcctggttaatatcagat 60
           ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 585 cagtttctctttgttgaatggaag--ttttttttttttcaaagcctggttaatatcagat 528

                                                                       
Query: 61  cacatataaaaaactgatattctgtcccccaaatgctcagtaatgatcctggattagaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 527 cacatataaaaaactgatattctgtcccccaaatgctcagtaatgatcctggattag--- 471

                                                                       
Query: 121 aaaaaaaaagaggggcaatttcaattcaatgaatggtaagcaaggaagcatgggacaaat 180
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 470 aaaaaaaaggaggggcaatttcaaatcaatgaatggtaagcaaggaagcatgggacagat 411

                                                                       
Query: 181 gggtagatcttctctggctagtgtgttgactttgctacccaaactctgcctaggaatgtg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 410 gggtagatcttctctggctagtgtgctgactttgctacccaaactctgcctaggaatgtg 351

                                                                       
Query: 241 agaatggggtattgggtcaaggttttggacactctgcaggctatgcaagtgcactggcta 300
           ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct: 350 agaatggggtagtaggtcaaggttttg-acactctgcaggct-tgcaagtgcactcgcta 293

                                                                       
Query: 301 tgtgatcaagactaggtctgaggttcatcttactagatgttgtgttagagtacagatagt 360
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 292 tgtgaccaagactaggtctgaggttcatctcactagatgttgtgttagagtacagatagt 233

                                           
Query: 361 caacctataattggtctgggaggtggaggtag 392
           ||||||||||||||||||||||||||||||||
Sbjct: 232 caacctataattggtctgggaggtggaggtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 785
Length adjustment: 9
Effective length of query: 383
Effective length of database: 776
Effective search space:   297208
Effective search space used:   297208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)