BAC Information

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BAC

Clone NameMSMg01-381M23
Chromosome4 (Build37)
Map Location 64,484,539 - 64,484,856
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381M23.T7 (MSMg01no381_m23.b1)MSMg01-381M23.TJ (MSMg01no381_m23.g1)
ACCAG485863AG485864
length737771
length of high quality
(start - end)		---435 (70 - 504)
definitionCHROMAT_FILE: MSMg01no381_m23.b1 PHD_FILE: MSMg01no381_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:20 2005CHROMAT_FILE: MSMg01no381_m23.g1 PHD_FILE: MSMg01no381_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGACGATCCGCGGNATTCCCC
GACCTCCAGAAGTTGACCTCTCTCTATCTCTCTATAAGATAGAGATCCAT
ATATCTCCCATCCCCATATATCTACCTCGATCCACATCCATATCTATCCC
CATCGTCCATCGTCCATCCGTATGTGTATGTGTATCNGNACCCNCCCCCC
CCCCCCCCCCCCCCCCNNCCCCNNCNNCNNCCCNCCCCCCNNCCCCTCCC
CCCCCCCNNCNCCCCCCTCCCTCCCCCCCCCCCCCCTCTCTCCCCTCCCC
CCCCCCCTCCTTCTTTTCCCCCNNCCCCCNCCNNNCNCCCCCCCCCCCCC
CCCCCCCCCCCCCCTTCCCCCCCCCCTTTTTCCCCCTCCCCCCCCTTTCC
CCCCCCTTCCCCCCCTCTTTTCCCTTCCTCCCCCCCCCCTCCCCCCCCCC
CCCCCCCTTTTNTCCTTCTCTCCCCCCCCCCCCCTCCCTCCCCTTTCTCT
TTCCCCCCCCCCCCCCCNTCCCCCCCCCCCCCCTCCCCCCCTCCNTCCCT
CCCCCCCCTCCTCCTTCTCCCCCCCCCCCCCCCTTTTCCCCCCCTCCCCC
CCCTCCCTTTCCCCTCCCCCCCCCCCCTNTTTTTTCCCCCCCCCTTCCCC
CCCTCCCCCCTTTCCTCCCTTCCCTTTCCCTCCCCCCCCCCTCCCCCCCC
CCCCCCTTCCTCTTTCCCCCCTNTNCCCCCCCCCCCC

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTAAAATCGTGAATCAAAAACTACATCATG
GCACTGGGTGGGCAGGGAGGTGAGAAGGAGGAGTTGGGGAAGAGAAATTA
TCATCATAGTATGCAGTGTAAATTGTTTTACAATACAAAAATAAACCTTT
TCTCCTATAAATTAATTTGGTCAGGTATCTTGTCTTATGAAAGAAATTCA
AGCAACTCACTTAGTGAGAAGGGTAAATGACCACCAGGTAGGTTGATAAT
TCACCCACTGGACAAATTGATGCTTTATGCCTCCAGCATGATGGTGTAGG
CCAGAAAGAGACTTCATCATAGTGCTCAAAAGAGCACTCAATTTAAAACT
TATGAATTGCTTATTTCTGGAATTTTCCATGTAATATTTTTGGACTGTGG
GTGACCACATGTAACTGAAACCGTGGAAAGCAAAACAGCAAAGTTGGACT
ACCACATANAATAAGCATTACACATGCTTTGTAGATTTGTTACATTTTCT
GCAAATATTTANGNTGAGTTTCAGTGTGTGCATGTTTGCATAAGGATGTA
CTTTTTAATCAGCCTCTACCATGGGTAAAGTTCTGTGGTTTTCCCTCCGG
GGAACTGGTTAAATCCAATGGGGCATTCATTGTTTTCTTTTTTTGGCATT
TAAACCAACGGACCCCTTTTTATACTTTTTAAAAGGTTTTTTCCCCCCCA
TTTCCGTATTTTCCCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_m23.g1 MSMg01no381_m23.g1 CHROMAT_FILE:
MSMg01no381_m23.g1 PHD_FILE: MSMg01no381_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:20 2005
         (435 letters)



>mm_chr4_64484539_64485373
          Length = 835

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaaatcgtgaatcaaaaactacatcatggcactgggtgggcagggaggtgagaagga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 318 tctaaaatcgtgaatcaaaaactacatcatggcactgggtgggcggggaggtgagaagga 259

                                                                       
Query: 61  ggagttggggaagagaaattatcatcatagtatgcagtgtaaattgttttacaatacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggagttggggaagagaaattatcatcatagtatgcagtgtaaattgttttacaatacaaa 199

                                                                       
Query: 121 aataaaccttttctcctataaattaatttggtcaggtatcttgtcttatgaaagaaattc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 198 aataaaccttttctcctataaattaatttggtcaggtatcttgtcttatggaagaaattc 139

                                                                       
Query: 181 aagcaactcacttagtgagaagggtaaatgaccaccaggtaggttgataattcacccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aagcaactcacttagtgagaagggtaaatgaccaccaggtaggttgataattcacccact 79

                                                                       
Query: 241 ggacaaattgatgctttatgcctccagcatgatggtgtaggccagaaagagacttcatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 78  ggacaaattgatgctttatgcctccagcatgatggtgtaggccagaacgagacttcatca 19

                             
Query: 301 tagtgctcaaaagagcac 318
           ||||||||||||||||||
Sbjct: 18  tagtgctcaaaagagcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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