BAC Information

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BAC

Clone NameMSMg01-382B10
Chromosome4 (Build37)
Map Location 142,012,997 - 142,260,295
singlet/doubletdoublet
Overlap geneLOC546484
Upstream geneZbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
Downstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382B10.T7 (MSMg01no382_b10.b1)MSMg01-382B10.TJ (MSMg01no382_b10.g1)
ACCAG486075AG486076
length767781
length of high quality
(start - end)		502 (31 - 532)497 (59 - 555)
definitionCHROMAT_FILE: MSMg01no382_b10.b1 PHD_FILE: MSMg01no382_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:43 2005CHROMAT_FILE: MSMg01no382_b10.g1 PHD_FILE: MSMg01no382_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,012,997 - 142,013,495)(142,259,861 - 142,260,295)
sequence
CGCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATTCTCAG
GCTGGACAGACAGCTTAGCAGTTACGAAGCTTGCTGTCAACCCTAAGGAC
CTGAGTCCGAATCTCAGCTCACGTAACAAGCCTGGACACGATGCCTGTTA
ACTCCCGCTTCTAGGGATCTGCCATCTTCTCCTGGCCTCCGCGTGTGCCC
CCACCTCATGTACATACAATTACGCACATACACAAATAAATAAAACAAAT
CTTTTCTTTAAAAAAGAACTTCTCATTTCAGCGTGTATGAGAACATTTAT
GCATGCATATTGTCCCCTATAGAACAATTTAAAGCTAGGTGTGAACATTT
GGGGAATCAAAATGTCTTGGTATTTGTCATCTCACTTGAACTTCAAAATA
AGCCCGTCTCCACTGTATTGTACCATTTTATGAACAGAGAAACCAAAGCC
ACAGTGAGGTTTTGTGATTTGCCCAGGGCACAAGGTAAGCAAGGTCTGGA
CTACTTGCAAAGCCACCTATCACCACTTGTTGCCTTAGGGAATAGATTAA
CAATGCCTGGCACCACCCAGCTCTGTCCCAAGCCCACTCCCTCACCATGG
ATCTATAGCTTATGAAGATGGGGAAAATTTGCCATTTTACCCCACAGAAA
GCTCATTGCGTCACCCCCATGTGCAAAGTCTATACCCAAAAACTCCCCCA
AGGTACTGCCTGAAAAATTTAAGTAAGACTTTAAAATTAGGTTTTATTCT
TGATTCTCCCATAAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCACATCCCGGAAGGAAATGGTTTATGGTGCTACTTTATAGTT
TATGACGCCCAGGAGAAGGTGAAGAGCCCCTCTGCCTCTGTCAGTCTCAT
CAGCATCAGTAAGAACTGACTTCCTGAAAATATATTATGTGCTGGGAAGA
CTCAGACACCCAGGAGACATGGTTCTTGACCTCCAAATAGGATCACATTC
TGAAAAAGAGAAGCACGTGTGCACGTGCGCACATGCGTGTGCGTGCGCGC
ATGCGTACATACGCACATGCACACTCACTCACGGACGCACACAGCAAAGA
ACAGGAGGATTTCTCTGGGAGGGAGGCATGTGCCTCATGAAAGATGCAAG
TGGTGTTTCTCGAAGGCAGTGGGCCTGAAATACACAGAAATGAAGGCTTT
TGTAAACGAAGTTAGATTTTAAATGCATGAGAGGAGCCAACTGTTTAAAG
GAAACTGGCAGAGAACTGCTCTCCCTCACTCAAAAAAAAAAAAATTAACT
TAGCAATGACAATAACCATCGTCTCATTTATCGACCTTATTAGCATCAAT
TTTTTTTCATTTTTAAAAAATTTGGGGGGATCTGAAAATGGCCTACAATA
GAACCTCTCCCCCTTTCTTACTTTGGGGAAAATCAAAGGACAAACTTGTT
CCTCTAAAAAGGTAAAATACCTTGTCTGGGTTTTTATTTGTCACCCCCCA
CGTCGTTTTTTTCCTCTCCCCAATATCCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_b10.b1 MSMg01no382_b10.b1 CHROMAT_FILE:
MSMg01no382_b10.b1 PHD_FILE: MSMg01no382_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:43 2005
         (502 letters)



>mm_chr4_142012794_142013695
          Length = 902

 Score =  957 bits (495), Expect = 0.0
 Identities = 498/499 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcattctcaggctggacagacagcttagcagttacgaagcttgctgtcaaccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcattctcaggctggacagacagcttagcagttacgaagcttgctgtcaaccc 263

                                                                       
Query: 64  taaggacctgagtccgaatctcagctcacgtaacaagcctggacacgatgcctgttaact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaggacctgagtccgaatctcagctcacgtaacaagcctggacacgatgcctgttaact 323

                                                                       
Query: 124 cccgcttctagggatctgccatcttctcctggcctccgcgtgtgcccccacctcatgtac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccgcttctagggatctgccatcttctcctggcctccgcgtgtgcccccacctcatgtac 383

                                                                       
Query: 184 atacaattacgcacatacacaaataaataaaacaaatcttttctttaaaaaagaacttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atacaattacgcacatacacaaataaataaaacaaatcttttctttaaaaaagaacttct 443

                                                                       
Query: 244 catttcagcgtgtatgagaacatttatgcatgcatattgtcccctatagaacaatttaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catttcagcgtgtatgagaacatttatgcatgcatattgtcccctatagaacaatttaaa 503

                                                                       
Query: 304 gctaggtgtgaacatttggggaatcaaaatgtcttggtatttgtcatctcacttgaactt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctaggtgtgaacatttggggaatcaaaatgtcttggtatttgtcatctcacttgaactt 563

                                                                       
Query: 364 caaaataagcccgtctccactgtattgtaccattttatgaacagagaaaccaaagccaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaaataagcccgtctccactgtattgtaccattttatgaacagagaaaccaaagccaca 623

                                                                       
Query: 424 gtgaggttttgtgatttgcccagggcacaaggtaagcaaggtctggactacttgcaaagc 483
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 gtgaggttttgtgatttgcccagggcacacggtaagcaaggtctggactacttgcaaagc 683

                              
Query: 484 cacctatcaccacttgttg 502
           |||||||||||||||||||
Sbjct: 684 cacctatcaccacttgttg 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_b10.g1 MSMg01no382_b10.g1 CHROMAT_FILE:
MSMg01no382_b10.g1 PHD_FILE: MSMg01no382_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:43 2005
         (497 letters)



>mm_chr4_142259399_142260295
          Length = 897

 Score =  810 bits (419), Expect = 0.0
 Identities = 431/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 49  gcccaggagaaggtgaagagcccctctgcctctgtcagtctcatcagcatcagtaagaac 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gcccaggagaaggtgaagagcccctctgcctctgtcagtctcatcagcatcagtaagaac 838

                                                                       
Query: 109 tgacttcctgaaaatatattatgtgctgggaagactcagacacccaggagacatggttct 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgacttcctgaaaatatattatgtgctgggaagactcagacacccaggagacatggttct 778

                                                                       
Query: 169 tgacctccaaataggatcacattctgaaaaagagaagcacgtgtgcacgtgcgcacatgc 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tgacctccaaataggatcacattctgaaaaagagaagcacgtgtgcacgtgcgcacatgc 718

                                                                       
Query: 229 gtgtgcgtgcgcgcatgcgtacatacgcacatgcacactcactcacggacgcacacagca 288
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 717 gtgtgcgcgcgcgcatgcgtacatacgcacatgcacacgcactcacggacgcacacagca 658

                                                                       
Query: 289 aagaacaggaggatttctctgggagggaggcatgtgcctcatgaaagatgcaagtggtgt 348
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aagtacaggaggatttctctgggagggaggcatgtgcctcatgaaagatgcaagtggtgt 598

                                                                       
Query: 349 ttctcgaaggcagtgggcctgaaatacacagaaatgaaggcttttgtaaacgaagttaga 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttctcgaaggcagtgggcctgaaatacacagaaatgaaggcttttgtaaacgaagttaga 538

                                                                       
Query: 409 ttttaaatgcatgagaggagccaactgtttaaaggaaactggcagagaactgctctccct 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttttaaatgcatgagaggagccaactgtttaaaggaaactggcagagaactgctctccct 478

                          
Query: 469 cactcaaaaaaaaaa 483
           ||| |||||||||||
Sbjct: 477 cacccaaaaaaaaaa 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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