BAC Information

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BAC

Clone NameMSMg01-382L21
Chromosome4 (Build37)
Map Location 51,242,589 - 51,243,106
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681
Downstream geneLOC100040814, LOC384015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382L21.T7 (MSMg01no382_l21.b1)MSMg01-382L21.TJ (MSMg01no382_l21.g1)
ACCAG486575AG486576
length757754
length of high quality
(start - end)		568 (34 - 601)459 (60 - 518)
definitionCHROMAT_FILE: MSMg01no382_l21.b1 PHD_FILE: MSMg01no382_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:34 2005CHROMAT_FILE: MSMg01no382_l21.g1 PHD_FILE: MSMg01no382_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACTTG
CTTACTCTTTGAATCTCTCTAGTGATTTTACTTTTAGACCTCCATAGCTA
CAAATTTAAAATAGGTACCTTCCACATTGTCCAATGAATCCTATGGAGTC
TCCTTAGTCCTTTGTTTTAATTCTATATTTTCATTTCACCCTGTAATTTT
TCTTCTGTTTAATAAATGATTTGATTAATCTTTGCACACTTCTTTTATCT
CACAGATCAATGTTAAGACTACTGAATGGGTTCACTGTATATGCTTTGGA
GTTCTTACCTTCAGTTTGCTTTTTGAACCAAGACCTACTTCTCCTACTTT
GCTTTCTTGTCTTTCTTGTCTTTCTTGTCTTTCTTATCTTTCTTATCTTT
CTTATCTTTCTTATCTTTCTTGTCTTTCTTGTCTTTTTCTTTCTTGTCTT
TCTTGTCTTTCTTGTCCTTCTTGTCCTTTTTGTCTTTCTTGTCCTTCTTG
TCTTTCTTCTCTTTCTTACCACCCTCTTTTCCTTCTCCATCTTTCTTTTT
CTTCTCCTTTTTCCCTTCCTTCTTGTCCTCTTTCTTTTCATCTCCCTTTT
CACTTGCAGAATCTTTAAACGAATCTTTGCTTTTTGAACTCTGTTTAACT
GGTATTTCTTCCCTCTTGCCACCTTTGGCAGCTTGCGTACATAAAAAGGT
TTCTTGTGAACACCTTGCATCCTTTTTAAAATCCCCTGGGTTCCTCTTTT
AAAAAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTGTTTAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG
TTTTTCTGGAGTCCAGCCTCTTGAGTTTATATATATTGGATATTAGTTCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTTTTGGTGGCCT
TTTTTTCTTATTGACGGTGTCTTTTGCCTTGCAGTAACTTTGCAATTTTA
TGAGGTCCCATTTATTGATTTTTGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTGCCCCGTGCACATATCTTCAAGGCTTTTCCCTAC
TTTCTTCTCTATAAGTTTAAGTCCCTCTGGTTTTATGTGGAGTTCCTTAA
TCCACTTATATTTGACCTTAGTACAAGGAGATAAGAATGGATCAATTAGC
TTTCTTCTACATAATAACTGCCAGTTGTGCCAGAACCATTTGTTGAAAAT
GCTGTCTTTTTTTCCACTGGATGGTTTTTGCTCCCTTGTCAAAGCTCAAG
TGACCATAGGTGTGTGGGCTCATTTCTGGGGCTTCAATTCTATTCCATTG
GNCCACTTGGCTTTTGCTAACCAGAACCATGCAGTTTTTTAACAATTGCT
CTTGTAGACACCCTTAAGGGTGGGTGGGGGATCCCCCCAAAATTTTTTTT
CCTTGGAAAATATTTTGTTATCCCGTTTTTTGTTTTCCCAAAGATTTTTC
AACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_l21.b1 MSMg01no382_l21.b1 CHROMAT_FILE:
MSMg01no382_l21.b1 PHD_FILE: MSMg01no382_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:34 2005
         (568 letters)



>mm_chr4_51242589_51243556
          Length = 968

 Score =  986 bits (510), Expect = 0.0
 Identities = 516/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacttgcttactctttgaatctctctagtgattttacttttagacctccatag 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcttacttgcatattctttgaatctctctagtgattttacttttagacctccatag 459

                                                                       
Query: 65  ctacaaatttaaaataggtaccttccacattgtccaatgaatcctatggagtctccttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctacaaatttaaaataggtaccttccacattgtccaatgaatcctatggagtctccttag 399

                                                                       
Query: 125 tcctttgttttaattctatattttcatttcaccctgtaatttttcttctgtttaataaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcctttgttttaattctatattttcatttcaccctgtaatttttcttctgtttaataaat 339

                                                                       
Query: 185 gatttgattaatctttgcacacttcttttatctcacagatcaatgttaagactactgaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gatttgattaatctttgcacacttcttttatctcacagatcaatgttaagactactgaat 279

                                                                       
Query: 245 gggttcactgtatatgctttggagttcttaccttcagtttgctttttgaaccaagaccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gggttcactgtatatgctttggagttcttaccttcagtttgctttttgaaccaagaccta 219

                                                                       
Query: 305 cttctcctactttgctttcttgtctttcttgtctttcttgtctttcttatctttcttatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cttctcctactttgctttcttgtctttcttgtctttcttgtctttcttatctttcttatc 159

                                                                       
Query: 365 tttcttatctttcttatctttcttgtctttcttgtctttttctttcttgtctttcttgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tttcttatctttcttatctttcttgtctttcttgtctttttctttcttgtctttcttgtc 99

                                                                       
Query: 425 tttcttgtccttcttgtcctttttgtctttcttgtccttcttgtctttcttctctttctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tttcttgtccttcttgtcctttttgtctttcttgtccttcttgtctttcttctctttctt 39

                                                 
Query: 485 accaccctcttttccttctccatctttctttttcttct 522
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  accaccctcttttccttctccatctttctttttcttct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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