Query= MSMg01no383_n08.b1 MSMg01no383_n08.b1 CHROMAT_FILE:
MSMg01no383_n08.b1 PHD_FILE: MSMg01no383_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:59 2005
(469 letters)
>mm_chr4_108275556_108276421
Length = 866
Score = 876 bits (453), Expect = 0.0
Identities = 464/469 (98%), Gaps = 3/469 (0%)
Strand = Plus / Plus
Query: 1 aacctaggtcctgtcagacatcaagatttttggaaagctgtaggtttgagtctacccgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctaggtcctgtcagacatcaagatttttggaaagctgtaggtttgagtctacccgag 260
Query: 61 tggttctgttgtagaagggggaaactgggtggggcatcgtagagagagatgataagtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttctgttgtagaagggggaaactgggtggggcatcgtagagagagatgataagtgaa 320
Query: 121 gcattcccttttatcatatagcttccatataggaataatagacgggtcttttcccttcta 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattcccttttatcatatagcttccatataggaataatagacgggtcttttcccttcta 380
Query: 181 ttgggtagatggtgacagactttcaggcctttctgttcttctatctaccaccaactgtag 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ttgggtagatggtgacagactttcaggcctttctgttct---atctaccaccaactgtag 437
Query: 241 gttgcatgtttctgctgtgcctgactctctcccctgtcgagagcaggaattccaagacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gttgcatgtttctgctgtgcctgactctctcccctgtcgagagcaggaattccaagacat 497
Query: 301 ctacagctttgtggaaagtaaacttcttgatgggactggagggtgagtagtgctgagtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctacagctttgtggaaagtaaacttcttgatgggactggagggtgagtagtgctgagtgg 557
Query: 361 acaggtgggcgtagtaagagctccgtctacccagggtgtgtggtaagcagagccattgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acaggtgggcgtagtaagagctccgtctacccagggtgtgtggtaagcagagccattgct 617
Query: 421 aaacctaggagaggagacttctgcccttggaagccttggtaagtataag 469
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 618 aaacctaggagagtagacttctgcccttggaagccttggtaagtataag 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 866
Length adjustment: 10
Effective length of query: 459
Effective length of database: 856
Effective search space: 392904
Effective search space used: 392904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_n08.g1 MSMg01no383_n08.g1 CHROMAT_FILE:
MSMg01no383_n08.g1 PHD_FILE: MSMg01no383_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:59 2005
(531 letters)
>mm_chr4_108455499_108456430
Length = 932
Score = 832 bits (430), Expect = 0.0
Identities = 456/466 (97%), Gaps = 3/466 (0%)
Strand = Plus / Minus
Query: 1 tacaggggggg---gttaagctatactttaaagtcatcggagagtggtggaaatcaatgc 57
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tacagggggggggcgttaagctatactttaaagtcatcggagagtggtggaaatcaatgc 407
Query: 58 aaacagaaagtggcagaatcaagacaactgacttcgagttgaagtggtttgaaacagaaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaacagaaagtggcagaatcaagacaactgacttcgagttgaagtggtttgaaacagaaa 347
Query: 118 gagatcttaggcagaagaaaggaggcaggtgagagataggtcaggagttgagagtaagat 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 346 gagatcttaggcagaagaaaggaggcaggtgagagataggtcaggagctgagagtaagat 287
Query: 178 gaggaagcaggaggggaaacattcttggatgaaataggagcagacaaaaggagacctact 237
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 286 gaggaagcaggaggggaaacagtcttggatgaaatgggagcagacaaaaggagacctact 227
Query: 238 gtgggtgcatgcatgcctcctgggtagttggttctctccttctatcttggggttccagag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gtgggtgcatgcatgcctcctgggtagttggttctctccttctatcttggggttccagag 167
Query: 298 ataaaactcagatcactaggtgtggccctttacccactgagccatctggccagcatatga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ataaaactcagatcactaggtgtggccctttacccactgagccatctggccagcatatga 107
Query: 358 cagaaggattttaagcaggttactatcaagcagcctccctcagcaagagtttgaatagaa 417
||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 106 cagaacgattttaagcaagttactatcaagcagcttccctcagcaagagtttgaatagaa 47
Query: 418 gggaagaatgtgtgaggcaagaagaaactggtcctgggaacaaatg 463
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 46 gggaagaacgtgtgaggcaagaagaaactggtcctgggaacaaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
