BAC Information

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BAC

Clone NameMSMg01-384A10
Chromosome4 (Build37)
Map Location 13,840,313 - 13,840,651
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384A10.T7 (MSMg01no384_a10.b1)MSMg01-384A10.TJ (MSMg01no384_a10.g1)
ACCAG487559AG487560
length784761
length of high quality
(start - end)		507 (36 - 542)528 (65 - 592)
definitionCHROMAT_FILE: MSMg01no384_a10.b1 PHD_FILE: MSMg01no384_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:13 2005CHROMAT_FILE: MSMg01no384_a10.g1 PHD_FILE: MSMg01no384_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAC
ACAAAAAATAATATCCACTATGATCAAGTAGGTTTCATCCCAGAGATGCA
GAAATGGTTCAATGTACAAGAAAATGAAAAAAAAAAAAGAGTTAATGCTA
ATATTTTTCAAATAATTCAAGATAGAAACAGAAGGAACTTTGACAAATCC
ATTTTATGAGGGCAAAGTTAACTTGCTACCCAAACAAAATGAAGACCCAG
GAAAAGATAATTACAGAAACATTTTCCTTATAAACATAGATGTGAAAACA
CTCAAGAACACACTTGGAAACCAAATTCAAGAACACAACAAAAATATTAT
CCACCATGATAAAGAAGGTTTCATCCCAGAGATACAGGGGTGGTCAACAT
ATGTAAATTAATAAATGAAATCCACCACACAAACAAACTGACAAATAACA
ACACATGATCATCTCATTAGATAAAGGAAAGGCCTTTGACAAAATTCAAC
ACCCCTTCATAAAAAAGAGTCCTGGAGAGAGTAGAAATATACNTAAGATA
CCTTACCATAATAAAGGCAGTTTATAGACATCACATAGACAATATTAACT
TAAATGAAACGGCACTCAAAGCACTTCCCCCTAAATCAGAAACAAGACAA
GATGCCCCATCCTCTTTGTACCATTTCATATAAGAACTTGAAGGCTTAGC
TAAAGGAAAAAAAAAACTGGAAGAAGAATAGAGGAATACAATTGGGAAGG
GAGGAACCAAAGTTTCCTTTATTTTTTTATAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATCTTCTAAGAAAAGCATAGTGGAGAAGAAGACTGA
GCCACTCCTGAGGCTGTGATGGCAGGAGATTCCTGGAAAGTGATGATGGG
CACATACGTGATGTGCACAAACACCTCTATGGGTGATGCTCCTAGAACAA
ACTAGAAAATTGTTCTATCTGTGAGTATATATAAATGTTGAACCTAATGC
CATCAGCAAGCTGCTTTTCTACTTAAAATAACTTAAGTAGGTTATATTGC
TTACCAGATGAGTCTTTAATGATTACAGATTTAAATTTCAGAACTATAAT
TTCTAACACGCTGAGAAGTTAGATCTCAAAGGGTAAGGAGTCCTATCACC
CAATTGTTTTGCTGGGCCAGCAAGAAAGCTCAACACGTATAAGGGGGTTT
ACTCGGGACTGATGACCAGAGTTCAATTCCTGAGACTCAAATAATAGACA
AGATAAACTGTCTTGTAAGACGAANACTTTAAAGAGACAAGGAATACCAC
GATGTAATTACCAAGAGATGAGAAAAGTTCCAATATAAGAATAGTAGTGC
ATTTCATGGATATATTACCAAAAGCAATCTACAGGTTCATATTCAATCCC
TATCATGATTCCCCAGAAGAACAGAGGAAAAATCCTGGAATTTCCATGAA
AACCCATGCCAGGGTCTATGAATTGTTTAAAAATGTAACCTCCCACTTTA
ATAAGATGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_a10.g1 MSMg01no384_a10.g1 CHROMAT_FILE:
MSMg01no384_a10.g1 PHD_FILE: MSMg01no384_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:13 2005
         (528 letters)



>mm_chr4_13840113_13841041
          Length = 929

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttctaagaaaagcatagtggagaagaagactgagccactcctgaggctgtgatggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttctaagaaaagcatagtggagaagaagactgagccactcctgaggctgtgatggca 260

                                                                       
Query: 61  ggagattcctggaaagtgatgatgggcacatacgtgatgtgcacaaacacctctatgggt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ggagattcctggaaagtgatgatgggcacatacgtgatatgcacaaacacctctatgggt 320

                                                                       
Query: 121 gatgctcctagaacaaactagaaaattgttctatctgtgagtatatataaatgttgaacc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gatgctcctagagcaaactagaaaattgttctatctgtgagtatatatacatgttgaacc 380

                                                                       
Query: 181 taatgccatcagcaagctgcttttctacttaaaataacttaagtaggttatattgcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgccatcagcaagctgcttttctacttaaaataacttaagtaggttatattgcttac 440

                                                                       
Query: 241 cagatgagtctttaatgattacagatttaaatttcagaactataatttctaacacgctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagatgagtctttaatgattacagatttaaatttcagaactataatttctaacacgctga 500

                                                  
Query: 301 gaa-gttagatctcaaagggtaaggagtcctatcaccca 338
           ||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagttagatctcaaagggtaaggagtcctatcaccca 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space:   476042
Effective search space used:   476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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