BAC Information

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BAC

Clone NameMSMg01-384L01
Chromosome4 (Build37)
Map Location 146,902,338 - 146,902,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384L01.T7 (MSMg01no384_l01.b1)MSMg01-384L01.TJ (MSMg01no384_l01.g1)
ACCAG488067AG488068
length740738
length of high quality
(start - end)		628 (34 - 661)467 (64 - 530)
definitionCHROMAT_FILE: MSMg01no384_l01.b1 PHD_FILE: MSMg01no384_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:02 2005CHROMAT_FILE: MSMg01no384_l01.g1 PHD_FILE: MSMg01no384_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAGAT
ACTCTTCATTTCACGGTGCAGATAGTGTGTGCATATTCACATGTCATGTT
TCCATTGTTCTGTTTTCCATGTAAATAAATGTCTCCCTATTCTTCATGTG
TATCTTTTTGATTGAAGTCATTTATTCACATGATATCACTGCAGCCCTTC
CTCTCTTCCTAGTAACCCCTCACATAGATCTCCCCTCACTCCGCTTCAAA
GCAGAAGTATTCATCTGTCGGATGTAGAGGTAGTGCAGTTCTTTTCCTAG
TCTATAGGGATCCTGAAGATGGTGACTTTTGACTTACAGTAGCACTTAGC
ATTCATGAGTTTCCATTTATTAATTCTTGACTTTATCATCAGAAACACTG
GTGTTCTGTTTAGGAAGTTGTTTCCTGATCCAACAAGTTCAAAGCTACTC
TCCACTTTTTGTTCCATTAGATTAAGTATGTCTGGATTTATACTGAGGTC
TTTGCTTCACTTGGACTTGAGTATTATGCAGGGTGTTAAATATGGATCTA
TATGCTTTTTTCTACATGATGACATCCAGTTAGACCAGCATCATTCACAA
AGATGTTCTCCCCTTTCCGTTGTATAGTTTTAGCTTCTTTGCCAAAATTT
AAGTGTCTGTAGGTGTGTGGGTCTATTTTTGGGTCTCCCATTGAAATCCA
TTAATCCATCTACTTATTTCTATACCAGTACCATAAAAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTC
AGTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATACTAA
GATTGGATTGTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTAAGGT
TTCTCTCCTGTATGAATTCTCTGATGAATACTAAGATGGGATTGTTGGGT
AAAGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAA
TTCTCTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACAT
TCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATACT
AAGATAGGATTCTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTAAG
GTTTCTCTCCTGTATGAATTCTCTGATGAATACTAATATTGGATTGTTTG
GTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATG
AATTCTCTGATGCATACCACGATTGAATTTGTTTTTAAAACATTTGTCCC
TTTCACTACATTTGTAAATTTTCTCTTCTGTATGAACTTCTTGATGACAC
CTAAGACGCACCTGATGGGCCAAGCATTTTGTCACCTTTATTACTTTTTG
CAAGTTTCTTTTTCTTTGACAATTTCCCCGCCTGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_l01.b1 MSMg01no384_l01.b1 CHROMAT_FILE:
MSMg01no384_l01.b1 PHD_FILE: MSMg01no384_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:02 2005
         (628 letters)



>mm_chr4_146902134_146903161
          Length = 1028

 Score = 1098 bits (568), Expect = 0.0
 Identities = 610/624 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagatactcttcatttcacggtgcagatagtgtgtgcatattcacatgtcat 64
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcat 264

                                                                       
Query: 65  gtttccattgttctgttttccatgtaaataaatgtctccctattcttcatgtgtatcttt 124
           |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct: 265 gtttccattgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatcttt 324

                                                                       
Query: 125 ttgattgaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgattgaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacc 384

                                                                       
Query: 185 cctcacatagatctcccctcactccgcttcaaagcagaagtattcatctgtcggatgtag 244
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 cctcacataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtag 444

                                                                       
Query: 245 aggtagtgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtagtgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttac 504

                                                                       
Query: 305 agtagcacttagcattcatgagtttccatttattaattcttgactttatcatcagaaaca 364
           || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 agaagcacttagcatttatgagtttccatttattaattcttgactttatcatcagagaca 564

                                                                       
Query: 365 ctggtgttctgtttaggaagttgtttcctgatccaacaagttcaaagctactctccactt 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 ctggtgttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactt 624

                                                                       
Query: 425 tttgttccattagattaagtatgtctggatttatactgaggtctttgcttcacttggact 484
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 tttgttccattagattaagtatgtctggatttatattgaggtctttgcttcacttggact 684

                                                                       
Query: 485 tgagtattatgcagggtgttaaatatggatctatatgcttttttctacatgatgacatcc 544
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 tgagtattatgcagggtgttaaatatggatctatatgcttttttctacctgatgacatcc 744

                                                                       
Query: 545 agttagaccagcatcattcacaaagatgttctcccctttccgttgtatagttttagcttc 604
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 745 agttagaccagcatcattcataaagatgttctctcctttccgttgtatagttttagcttc 804

                                   
Query: 605 tttgccaaaatttaagtgtctgta 628
           ||||||||||||||||||||||||
Sbjct: 805 tttgccaaaatttaagtgtctgta 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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