BAC Information

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BAC

Clone NameMSMg01-384P18
Chromosome4 (Build37)
Map Location 125,646,915 - 125,845,559
singlet/doubletdoublet
Overlap geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3
Upstream geneRspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneMtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384P18.T7 (MSMg01no384_p18.b1)MSMg01-384P18.TJ (MSMg01no384_p18.g1)
ACCAG488291AG488292
length761767
length of high quality
(start - end)		397 (59 - 455)233 (63 - 295)
definitionCHROMAT_FILE: MSMg01no384_p18.b1 PHD_FILE: MSMg01no384_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:25 2005CHROMAT_FILE: MSMg01no384_p18.g1 PHD_FILE: MSMg01no384_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,845,163 - 125,845,559)(125,646,915 - 125,647,143)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGGTCT
CCCTGCTGAATACTTGTTTTATCACTAAGGAGTTTCATCCTTGGTGTGCC
ACCCACCACCTGCGCCCACCCACAGCACAGCTTTTCTTTTGAGTATTAGT
AGTGACAACACACTAACAAAGGGGCTTTGCTGCAATACCTGAGCCAGCCA
GTATGACTCACAGGCTTACTTGGCTTCTCTATTGATTCACATGTTAGACT
GATAATGGAGGCCATGGTTGTTTTGTGTTCTTCATGTGTGATGCATACTC
ACCACGGGTCTAGAAACTGTTGTGTCACTGAAAATGACCGGGGAACAGAG
AGGAAACCCCAGGTCTACTGGTGGGCAGGGGTGAAAGGGGTGAACAGGTT
GGCGCTGACTTGGTTGTTTGGTAGTTTGGCTGGCTGACAGACCAGCCTTG
ATTTTGATTTTTATTTTCTCTCTCACTTTTGATTCTCTCTCTCCCTCCCT
CCCTACCTCCCTCCCTTCCCTCTCCCTTAATAGCGTTCTTTCTTTTTCAC
TAAGGGCTTTACCCTGGTCGACCTGTATGTACTTAAAATACCTCTGAAGA
ATAGCAAGGTTTCGTAACCTTCTTCGTTTGTTCTCTTAAAGTTTATTTTT
TATCTTCTCCATCCCACTCTCCCTTTTTTCTCTACTCTTTACTTATTCGT
CCCTGACACATATGACTTGTGTCTTAAAAAGCTTTTTTTATAATGCAATT
TTATTGTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTGAGCCAGGCAGAACTGGACACTTGAGATCCAGGGC
AAAACAGTCATCTCTCCAGCCTCTGCTCGGGTAAGGGCTTCCGCCTAAAA
CCTCTCTGCTGTCTGCTAACACCTCACTGATGCTTTGATTGCGCTGAGAG
CTCCAGCCCAGCTGTTGAGCCTCTCTACCAGCTGGGGCTTAGCTCAGTTC
CTCCAAGCTAAGAAATAAGCAAGGACCCGGGGGGGGGGGGGGGNNNNNNN
NNNNNNTTTTTTNNNNNNNTTTTNNTTNTTNGNNTTTTTTTTTTATTTTT
TNTTCTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTGTTTNTN
TTTNTTTTGTGTTTTGTTTGTTGGTTGTTGTTGTTTGGGGTGTTTTTTTG
TTGTTTTTTTTTCCCTCTTTTCTCCTCCCTTTTTTTTTCTCCCCTCTTTT
CTTCCTTTTTCTTTCCCCTCTCTTTTCTCCGTTCCCACCCTTGCTTTTTC
CTCCTCTTCTTTTTTATCTCTTTATCTTTTTCTTCCACTGTATTTTCCCA
TTATTTTCTATTAACATCCCATTCTTTCTTCCTTTATCCATTAGCATCAC
TCCTTTCTTCTTTTTTTAACACCCTTACGCTTTATAGCCGTTATCACCTC
CTTTTTTTCCCCCCCTTTTTTCTTTTTTTTTATTTCCCTTGTTTTTTGCT
TATTTATATTCTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_p18.b1 MSMg01no384_p18.b1 CHROMAT_FILE:
MSMg01no384_p18.b1 PHD_FILE: MSMg01no384_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:25 2005
         (397 letters)



>mm_chr4_125844963_125845759
          Length = 797

 Score =  714 bits (369), Expect = 0.0
 Identities = 390/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacttgttttatcactaaggagtttcatccttggtgtgccacccaccacctgcgccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aatacttgttttatcactaaggagtttcatccttggtgtgccacccaccacctgcgccca 538

                                                                       
Query: 61  cccacagcacagcttttcttttgagtattagtagtgacaacacactaacaaaggggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cccacagcacagcttttcttttgagtattagtagtgacaacacactaacaaaggggcttt 478

                                                                       
Query: 121 gctgcaatacctgagccagccagtatgactcacaggcttacttggcttctctattgattc 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 477 gctgcaatacctgagccagccagtgtgactcacaggcttacttggcttctctattgattc 418

                                                                       
Query: 181 acatgttagactgataatggaggccatggttgttttgtgttcttcatgtgtgatgcatac 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acgtgttagactgataatggaggccatggttgttttgtgttcttcatgtgtgatgcatac 358

                                                                       
Query: 241 tcaccacgggtctagaaactgttgtgtcactgaaaatgaccggggaacagagaggaaacc 300
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 357 tcaccacgggcctagaaactgttgtgtcactgaaaatgactggggaacagagaggaaacc 298

                                                                       
Query: 301 ccaggtctactggtgggcaggggtgaaaggggtgaacaggttggcgctgacttggttgtt 360
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 297 ccaggtctactggtgggcaggggtgaaaggggtgaacaggttggtgttgacttggttgtt 238

                                                
Query: 361 tggtagtttggctggctgacagaccagccttgatttt 397
           ||||||||||||||||||||||||||| |||||||||
Sbjct: 237 tggtagtttggctggctgacagaccagtcttgatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_p18.g1 MSMg01no384_p18.g1 CHROMAT_FILE:
MSMg01no384_p18.g1 PHD_FILE: MSMg01no384_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:25 2005
         (233 letters)



>mm_chr4_125646715_125647347
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagccaggcagaactggacacttgagatccagggcaaaacagtcatctctccagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagccaggcagaactggacacttgagatccagggcaaaacagtcatctctccagcct 260

                                                                       
Query: 61  ctgctcgggtaagggcttccgcctaaaacctctctgctgtctgctaacacctcactgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctcgggtaagggcttccgcctaaaacctctctgctgtctgctaacacctcactgatg 320

                                                                       
Query: 121 ctttgattgcgctgagagctccagcccagctgttgagcctctctaccagctggggcttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgattgcgctgagagctccagcccagctgttgagcctctctaccagctggggcttag 380

                                                            
Query: 181 ctcagttcctccaagctaagaaataagcaaggacccggggggggggggg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagttcctccaagctaagaaataagcaaggacccggggggggggggg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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