BAC Information

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BAC

Clone NameMSMg01-385L12
Chromosome4 (Build37)
Map Location 81,289,762 - 81,290,267
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e, Mpdz, LOC100040131
Downstream geneLOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385L12.T7 (MSMg01no385_l12.b1)MSMg01-385L12.TJ (MSMg01no385_l12.g1)
ACCAG488853AG488854
length760766
length of high quality
(start - end)		506 (49 - 554)516 (59 - 574)
definitionCHROMAT_FILE: MSMg01no385_l12.b1 PHD_FILE: MSMg01no385_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:22 2005CHROMAT_FILE: MSMg01no385_l12.g1 PHD_FILE: MSMg01no385_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATACGACTCACTTTTCAGAGAGGATNCGCGGAATTCCCATGTCCACGA
GCTCCGTGTATTATTTCAGGTGGCCAAAGACACATCCTCTGGCTTTCTGC
AACCTACTCCTTCTAAGTCTTGATTGGCTTGCCCGGGTTCAGTTCTGCAT
CAATGCCACTGCGAGACCTGAATATTATAATATTTACCAGATTGTGTGAA
AAGGACACAGGTGTCTTCTGATAAATGGAATACAAATATCAAAATATTCA
GAGGAAGGGCAAAGCGGTGTCAGGCAGCTCACATTCCAGCTAATTGAAAC
TTCTGGGAGGGAAATGTCCCTATGATTAGTTACCTGGAGACAGGAAGTGA
AGGGTTTTGCCTTTCTGTGTTTCAAATGGCTGCAGTAATAACACCTTGGA
GAAAGAAAATATCTAACAGAAACAACTGATTTTTTTTAAAGCGGAAAGTT
TACTAAGTTTTTTGGCAAGTACTTGAAAGTGTGTTTCCCTAGCTGAGGAT
GCCCAGCTTCATCACAACACAGTCACCGGAATCAGAAATTAACTTCAGCA
TGTTTCACCCATTTACAATTTGTATTGCACAAATTGTCCCTAAAATGTCT
TTAATAACAAAAAGAGCTAGTCCACATGACATTTGTTTGTCACGTCCTTT
TTAGCTCCCTTCAGTCTAAAATAACCTTTAGTCTTTTAGACACCTAAGTC
CCTTAAAAAAAGATTTCCTTAAAAAGAAACGGATAGGAATAAAATTGTTT
TGACCCCTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGTTAGAGGCTAGAAAAAATATCCCGGGAGCTGACAGGCAGC
CTACATGGGATTCCCTTTGACTTGCCCCAGGTGGGACTACAACATGGCAG
AAGCTAGGGAGAGTTTGAAATCTATCACCAGGCTCTGGTGGCAAGTTTCC
GAGGTGCCTCAAGATGGCCCACTAATTTGTCTAAGGTAAGAGAAGGTATA
TTACAGTTACATGATCTAGTGAAGGAGGCAGAAGAAAGAGGGGAAAAGCA
GAAGAAAGAGAAAGAGACAGAGACAGGACGTAGATAGATAGGGAACCTGG
GCAACATAAGACCAATCTGCTTAACAGAATTAGGTGAGTTGGGGGACCGA
GCTAAAAACGGCTCAGCTGTGTCAGACTGAAGTTACTTATTTGGGATACA
CCCTTCGAGACGGGAAGAGGTGGCTAAAAGAAGCCAGAAAAGAGAATTCT
TGGGCACCGCTGGCTTCTGCAGGCTCTGGATACCTGGGTTTGCAATCTTA
GCTGCCCCGTTGTACCCCCTAACCAAGGAAGGGGAGGTGTTTGTATGGAT
CCCATAGAGTCTTTTACGAAATTAACAAGGCCCCAATTATTGGCTCCAGC
CTTTGCCTTGCCTGGACTGACTTTTGAACCCGGGCAATAGTTATGTGTTT
TTATTTATTACCCTGGTGCCCCTGCTCGGGTTTTCCTTTCCCGTAAACTT
CTTGTTCGCCCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_l12.b1 MSMg01no385_l12.b1 CHROMAT_FILE:
MSMg01no385_l12.b1 PHD_FILE: MSMg01no385_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:22 2005
         (506 letters)



>mm_chr4_81289562_81290467
          Length = 906

 Score =  932 bits (482), Expect = 0.0
 Identities = 500/506 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagctccgtgtattatttcaggtggccaaagacacatcctctggctttctgcaacctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gagctccgtgtattatttcaggtggccaaagacacatcctctggctttctgcaacctact 647

                                                                       
Query: 61  ccttctaagtcttgattggcttgcccgggttcagttctgcatcaatgccactgcgagacc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 646 ccttctaagtcttgattggcttggccgggttcagttctgcatcaatgccactgcgagacc 587

                                                                       
Query: 121 tgaatattataatatttaccagattgtgtgaaaaggacacaggtgtcttctgataaatgg 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 586 tgaatattataatatttaccagattgtgtgaaaaggacacaggtgtgttctgataaatgg 527

                                                                       
Query: 181 aatacaaatatcaaaatattcagaggaagggcaaagcggtgtcaggcagctcacattcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aatacaaatatcaaaatattcagaggaagggcaaagcggtgtcaggcagctcacattcca 467

                                                                       
Query: 241 gctaattgaaacttctgggagggaaatgtccctatgattagttacctggagacaggaagt 300
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gctaattgaaacaacagggagggaaatgtccctatgattagttacctggagacaggaagt 407

                                                                       
Query: 301 gaagggttttgcctttctgtgtttcaaatggctgcagtaataacaccttggagaaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaagggttttgcctttctgtgtttcaaatggctgcagtaataacaccttggagaaagaaa 347

                                                                       
Query: 361 atatctaacagaaacaactgattttttttaaagcggaaagtttactaagttttttggcaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 346 atatctaacagaaacaactgattttttttaaagcggaaagtttactaagtttgttggcaa 287

                                                                       
Query: 421 gtacttgaaagtgtgtttccctagctgaggatgcccagcttcatcacaacacagtcaccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtacttgaaagtgtgtttccctagctgaggatgcccagcttcatcacaacacagtcaccg 227

                                     
Query: 481 gaatcagaaattaacttcagcatgtt 506
           ||||||||||||||||||||||||||
Sbjct: 226 gaatcagaaattaacttcagcatgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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