BAC Information

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BAC

Clone NameMSMg01-385P23
Chromosome4 (Build37)
Map Location 66,665,543 - 66,665,980
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385P23.T7 (MSMg01no385_p23.b1)MSMg01-385P23.TJ (MSMg01no385_p23.g1)
ACCAG489067AG489068
length752756
length of high quality
(start - end)
486 (34 - 519)438 (64 - 501)
definitionCHROMAT_FILE: MSMg01no385_p23.b1 PHD_FILE: MSMg01no385_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:43 2005CHROMAT_FILE: MSMg01no385_p23.g1 PHD_FILE: MSMg01no385_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACTG
AGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCCACCTCACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTG
GATGTTGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACAT
AGTACTACCGGAGGATCTAGCAATATCTCTCCTGGGCATATATCCAGAAC
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTAGTCAG
CTATTANNAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
NNAGGCATCATCCTGAGTGAGGTAACACATTCTCAAAGAACTCACACAAT
ATGTACTCACTGATAAATGATATTAGCCCCAACCGAGGATACCCATATAT
AAGATACATTTGTTAACACCTGAAACTCAGAGAATGAAAATGAGGGGGAC
TTATGCCCTTCTTAAATGGGAGAAACCCCCTGAAGGAGTACAAAAACATT
TN
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTATAACAAAAGCCACTACAAAACACCTGTAAAATC
TGGATGCTCAGAGATACTGAGATCCCAAACCAATTACCATTTTATCGCCT
GGCTTCCTGCTTGTCTCAATAGGTTCTAGTTTGTCTTTATATTTCTCGAA
CTCATATCTGTCCTTGCTTGCTTATTATGACTTGACACAATCTAGGGCCA
CTTGGGAAGAGAAATTCTAAGTTGAGAAAATACCTCTATAAGATTTACAT
GTAGGTAAGGTTTTCTTCTTATTTATGCAAGTAGTTCCTTCCCATTGTGG
GTGATACTACCCTAGGCAGGTGGTCTTGGAGGCTTTAAGAAGCAAGTTGG
GCTAGCCTTCAAGAGACAGCAAACCAAAAAGAAGCACTACTCTGTAGTCT
CTGTCAGTTCCTGCCTCCAGGTTCTTGCTCAGTTTGAATTCCTGCTCTGA
ATTCCTTCAGTGATTGCCTATGATGATNGTTAACTGAAAACTATAATAAT
CCCATTCTTAAAAAAGNTTTTTGGTTGTTCCTTTTGCTTTTTTGGCTTGG
GGNTATCCCCGAAATTAAACATACTAAGGGTTCCTCCCTTGTTATTCTGA
AGACCTGTCCATACAGATACTCCCAAAAAGAACATCCCAACCAAGTTTAA
TTGGTGTTAAGAAAAAACAAGGTTATTGGCACAACTTTAAAAAAACTTTC
TTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_p23.g1 MSMg01no385_p23.g1 CHROMAT_FILE:
MSMg01no385_p23.g1 PHD_FILE: MSMg01no385_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:43 2005
         (438 letters)



>mm_chr4_66665343_66666180
          Length = 838

 Score =  824 bits (426), Expect = 0.0
 Identities = 435/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctataacaaaagccactacaaaacacctgtaaaatctggatgctcagagatactgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctataacaaaagccactacaaaacacctgtaaaatctggatgctcagagatactgagat 260

                                                                       
Query: 61  cccaaaccaattaccattttatcgcctggcttcctgcttgtctcaataggttctagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaaaccaattaccattttatcgcctggcttcctgcttgtctcaataggttctagtttg 320

                                                                       
Query: 121 tctttatatttctcgaactcatatctgtccttgcttgcttattatgacttgacacaatct 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tctttatatttctcgaactcatatctgtccttgcttgcatattatgacttgacacaatct 380

                                                                       
Query: 181 agggccacttgggaagagaaattctaagttgagaaaatacctctataagatttacatgta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agggccacttgggaagagaaattctaagttgagaaaatacctctataagaattacatgta 440

                                                                       
Query: 241 ggtaaggttttcttcttatttatgcaagtagttccttcccattgtgggtgatactaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaaggttttcttcttatttatgcaagtagttccttcccattgtgggtgatactaccct 500

                                                                       
Query: 301 aggcaggtggtcttggaggctttaagaagcaagttgggctagccttcaagagacagcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcaggtggtcttggaggctttaagaagcaagttgggctagccttcaagagacagcaaa 560

                                                                       
Query: 361 ccaaaaagaagcactactctgtagtctctgtcagttcctgcctccaggttcttgctcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ccaaaaagaagcactactctgtagtctctgtcagttcctgcctccaggttcttgctctgt 620

                             
Query: 421 ttgaattcctgctctgaa 438
           ||||||||||||||||||
Sbjct: 621 ttgaattcctgctctgaa 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)