CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAATTGTACCTCTAAATCTCTACTTATACACTAGTACTTGTATA
CTTAAAACACTAGGCATCTACCTCTGGCCCATAGTAGCACACAGGCACAC
ACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTAAACAACTAAAAATATAT
TAATGATTCTATGATTAGACAAAGTAAGGATAAAATAAAGATGACAGTGG
ATGCCATCACTGTCAACAGTTGTTTTTTTAAGATAAGTTGCTCTATAAAC
AATTGAGCTTATTTCCAAATGGACTTTGTAAATATCCTATTTACAAAGCA
CTTATTTTTCTTTCTCTTCTATACTATCAAAGTGTCAGAGAGTCAATAGA
AGTTTTCATTTGCACCTTCTGACTGGAGGTCAGCAGTCTCCAACAGAGAT
ACTTTCTTTAGATTTAGTGGTTACATTAGACAAACATAACTAAGAGTATC
TTAACCAGTATTTTGTGAAAAGGTATATAGATACTTCACCAGATGGCAAA
TGCGCATTGCATAAGGGTCTTCAAGTAAAAACACATCACTAACAATATAA
TAAACTCAAGATGTTTTGGCAGTTGTTATAGGACCGTGTTAAGAAAAAGG
GCCAATACAATTCATTTAATTTGTATATCAGAAGGGGCAAATAGATACAC
ATAGN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTTAATGGGG
TTATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGA
TATTAGTCCCCCGTCAGATTTAGGATTAGTAAAAATTCTTTCATAATCTG
TTGGTGGCCTTTTGTCTTATTGACAGTGTCTTTTGTCTTACAGAAGCTTT
GCAATTTTATTAGGTCCCATTTGTCAATTCTTATAGCCCAAGCCATTGCT
CTTCTGTTCTGGAATTTTTCCTCTGTACCCATATCTTCGAGGCTTTTCCC
CACTCTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCTT
TGATCCACTTAGGCTTGAGCTTTGTACAAGGAGATAGGAATAGATCAATT
GGCATTCTTCTACATGATAACCCGCCCGTTCTACCAGCACCATTTGTTGA
AAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCTCTTGTCAAAGATC
AAGTGACCATAAGTGTGTGGATTCATTTCTGGGTCTTCAATTTTATTTCA
TTGATCTACCTGTCTGTTGCTGTACCAGTACCATGCAGTTTTTATCACAA
TTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCACCAGGGGTT
CTTTTATTGAAAATAGTTTTTGCTATCCTAGGATTTTTGTTATTCTAGAT
GCAT

Query= MSMg01no386_e19.b1 MSMg01no386_e19.b1 CHROMAT_FILE:
MSMg01no386_e19.b1 PHD_FILE: MSMg01no386_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:05 2005
         (684 letters)



>mm_chr4_89656814_89657897
          Length = 1084

 Score = 1205 bits (623), Expect = 0.0
 Identities = 673/701 (96%), Gaps = 18/701 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    atctctacttatacactagtacttgtatacttaaaacactaggcatctacctctggccca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 atctctacttatacactagtacttgtatacttaaaacactaggcatctacctctggccca 1000

                                                                        
Query: 61   tagtagcacacagg------------------cacacacacacacacacacacacacaga 102
            ||||||||||||||                  |||||||||||||||||||||||||| |
Sbjct: 999  tagtagcacacaggcacacacacacacacacacacacacacacacacacacacacacaca 940

                                                                        
Query: 103  gagagagagagagagagagagagagagagagagagagagagagagagagagagagaatta 162
             | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  cacacagagagagagagagagagagagagagagagagagagagagagagagagagaatta 880

                                                                        
Query: 163  aacaactaaaaatatattaatgattctatgattagacaaagtaaggataaaataaagatg 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  aacaactaaaaatatattaatgattctatgattagacaaagtaaggataaaataaagatg 820

                                                                        
Query: 223  acagtggatgccatcactgtcaacagttgtttttttaagataagttgctctataaacaat 282
            ||||||||||||||||||||||||||||| | |   ||||||||||||||||||||||||
Sbjct: 819  acagtggatgccatcactgtcaacagttgctataagaagataagttgctctataaacaat 760

                                                                        
Query: 283  tgagcttatttccaaatggactttgtaaatatcctatttacaaagcacttatttttcttt 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  tgagcttatttccaaatggactttgtaaatatcctatttacaaagcacttatttttcttt 700

                                                                        
Query: 343  ctcttctatactatcaaagtgtcagagagtcaatagaagttttcatttgcaccttctgac 402
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 699  ctcttctatactatcaaagtgtcagagagtcaatagaaattttcatttgcaccttctgac 640

                                                                        
Query: 403  tggaggtcagcagtctccaacagagatactttctttagatttagtggttacattagacaa 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  tggaggtcagcagtctccaacagagatactttctttagatttagtggttacattagacaa 580

                                                                        
Query: 463  acataactaagagtatcttaaccagtattttgtgaaaaggtatatagatacttcaccaga 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  acataactaagagtatcttaaccagtattttgtgaaaaggtatatagatacttcaccaga 520

                                                                        
Query: 523  tggcaaatgcgcattgcataagggtcttcaagtaaaaacacatcactaacaatataataa 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519  tggcaaatgcgcattgcataagggtcttcaagtaaaaacacatcactaacaatataataa 460

                                                                        
Query: 583  actcaagatgttttggcagttgttataggaccgtgttaagaaaaagggccaatacaattc 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459  actcaagatgttttggcagttgttataggaccgtgttaagaaaaagggccaatacaattc 400

                                                     
Query: 643  atttaatttgtatatcagaaggggcaaatagatacacatag 683
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 399  atttaatttgtatatcagaaggggcaaatagatacacatag 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)