Query= MSMg01no386_j19.b1 MSMg01no386_j19.b1 CHROMAT_FILE:
MSMg01no386_j19.b1 PHD_FILE: MSMg01no386_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:27 2005
(662 letters)
>mm_chr4_44756576_44757637
Length = 1062
Score = 1087 bits (562), Expect = 0.0
Identities = 607/624 (97%), Gaps = 6/624 (0%)
Strand = Plus / Minus
Query: 5 ggaattctcttatctgtctcgttttgagacagctcaggctttcctcaaagttgctttata 64
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggaattctcttatctgt-ttgttttgagacagctcaggctttcctcaaagttgctttata 561
Query: 65 gacaaggataatgttgaacttggggtcctatgttggggttatgtgatgttggggacaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacaaggataatgttgaacttggggtcctatgttggggttatgtgatgttggggacaaac 501
Query: 125 tcaggatttgagcagactttctgactctaataatttgcattctgtgcaatactgggtttg 184
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 ccaggatttgagcagactttctgacactaataatttgcattctgtgcaatactgggtttg 441
Query: 185 ctctatcttttctttagtcagttggcactctctgcctttggcaagtattcttgtgtaccc 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 ctctatcttttctttagtcagttggcactctctgcctttggcaactattcttgtgtaccc 381
Query: 245 aatttttctgaaatactccatttattggaattatttggcattctgctttcacctccttta 304
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 380 agtttttctgaaatactccatttattggaattatttggcattctgcttccacctccttta 321
Query: 305 gaactgtaggagtatatggaacttctatatttatttatttatatatttgtttgtttgttt 364
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 gaactgtaggagtatatggaacttctatatttatttatttatata----tttgtttgttt 265
Query: 365 gtttgtttaatcttttgagataaggccttgggaagtagccccgactagcctgaatcttgc 424
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct: 264 gtttgtttaatcttttgagataaggccttggaaagtaggccagactagcctgaatcttgc 205
Query: 425 aatttagcccagtttggccttaaatttgtaatcctcctgcctcagcctcccttgagatta 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aattcagcccagtttggccttaaatttgtaatcctcctgcctcagcctcccttgagatta 145
Query: 485 cacatatgtgacactattcttaattttttgggggaaatatctgtagtcttttctataata 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 144 cacatatgtgacactattcttaatttttttggggaaatatctgtagtcttttctataata 85
Query: 545 actattttaatttgcattcccatcaacagtaggtgagtatttttcttttttc-ttttttt 603
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 84 actattttaatttgcattcccatcaacagtaggtgagtatttttcttttttctttttttt 25
Query: 604 ttcttttttctttttttcttttca 627
||||||||||||||||||||||||
Sbjct: 24 ttcttttttctttttttcttttca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_j19.g1 MSMg01no386_j19.g1 CHROMAT_FILE:
MSMg01no386_j19.g1 PHD_FILE: MSMg01no386_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:27 2005
(602 letters)
>mm_chr4_44572447_44573454
Length = 1008
Score = 1004 bits (519), Expect = 0.0
Identities = 580/609 (95%), Gaps = 18/609 (2%)
Strand = Plus / Plus
Query: 1 tgtcagctacatgactccagatgaaaagccgaactagctaaaacaggaacaaccctcacc 60
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 207 tgtcagctacctgactccagatgaaaagcccaactagctaaaacaggaacaaccc----- 261
Query: 61 cccacccccacccccaccaagtgcctcaggttctatgccccactctgctggcctgagata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 -ccacccccacccccaccaagtgcctcaggttctatgccccactctgctggcctgagata 320
Query: 121 tatccactgctatatccactgctcagggcagcagaggtccacaggagggtctgaggcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 321 tatccactgctatatccactgctcagggcagcagaggtccacaggaggggctgaggtgat 380
Query: 181 ggggacatgaaggccagctggctcttctttaacctgccctgtgactctgctcacagcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggacatgaaggccagctggctcttctttaacctgccctgtgactctgctcacagcctc 440
Query: 241 tcttattcttatcgtggccgtccaggcctctctatccacggtggagggtgaagttatcgt 300
||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tcttacccttagcgtggccgtccaggcctctctatccatggtggagggtgaagttatcgt 500
Query: 301 acactgcatgacggtgtctctggcccctgagaggtgtgtgctacaatgaaccccatctgc 360
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 agactgcatgacggtgtctctggcccctgagaggtgtgtgctagaatgaaccccatctgc 560
Query: 361 acttcccaacccaggcctgcttcaacctccagccatgcttctccgacagggaggacttat 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 acttcccaacccaggcctgcttca-cctccagccatgcttctccgacagggaggacttat 619
Query: 421 ccaccaaggacagggcccagaggccctgcacagctgcccttcccagacagacctgcagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccaccaaggacagggcccagaggccctgcacagctgcccttcccagacagacctgcagag 679
Query: 481 gtttgctatgtggctggcctcttgacttgtggaaggaagacacaggattttttgcattaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtttgctatgtggctggcctcttgacttgtggaaggaagacacaggattttttgcattaa 739
Query: 541 ccagtttttttttttttt------ggtggggggctggtttttgttttttgttc---acca 591
|||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct: 740 ccagttttttttttttttttttttggtggggggctggtttttgttttttg--ccccacca 797
Query: 592 accccagtg 600
|||||||||
Sbjct: 798 accccagtg 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1008
Length adjustment: 10
Effective length of query: 592
Effective length of database: 998
Effective search space: 590816
Effective search space used: 590816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
