Query= MSMg01no386_k19.b1 MSMg01no386_k19.b1 CHROMAT_FILE:
MSMg01no386_k19.b1 PHD_FILE: MSMg01no386_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:32 2005
(249 letters)
>mm_chr4_32389881_32390528
Length = 648
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 1 gctgggagggggggaaaggggaggacagggataagaaacacacagctccagaggggtaca 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgggagggggg-aaaggggaggacagggataagaaacacacagctccagaggggtaca 259
Query: 61 gcccttgctttgcagttgcctgtgtggatagaaaccagatggcatgctggaacacccgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcccttgctttgcagttgcctgtgtggatagaaaccagatggcatgctggaacacccgct 319
Query: 121 tggctatctgaggagccaaacatatggctaatggtggggagagcgagcctcagagccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggctatctgaggagccaaacatatggctaatggtggggagagcgagcctcagagccaga 379
Query: 181 gctttgctgatgtttcatattacagattgttacagtgtgtcattacatggcaaacctaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctttgctgatgtttcatattacagattgttacagtgtgtcattacatggcaaacctaag 439
Query: 241 tgcttaata 249
|||||||||
Sbjct: 440 tgcttaata 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space: 153360
Effective search space used: 153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_k19.g1 MSMg01no386_k19.g1 CHROMAT_FILE:
MSMg01no386_k19.g1 PHD_FILE: MSMg01no386_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:32 2005
(692 letters)
>mm_chr4_32529474_32530564
Length = 1091
Score = 1122 bits (580), Expect = 0.0
Identities = 654/695 (94%), Gaps = 27/695 (3%)
Strand = Plus / Minus
Query: 1 agaaggacgttaaagtgaatcatgacctggcctgcagtctaaaccctaagagagacaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 agaaggacgttaaagtgaatcatgacctggcctgcagtctaaaccctaag---------- 709
Query: 61 taggataagttgaacaacagcagtgtgtgctacaccccatttgcatcacactccaaactc 120
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 -------------acaacagcagtgtgtgctacaccccatttgcatcacactccaaactc 662
Query: 121 cgaggcctgtcacagcagaggaagaaagagctcgctggaggaacaaccagggaaccagca 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgaggcctgtgacagcagaggaagaaagagctcgctggaggaacaaccagggaaccagca 602
Query: 181 cgggtgagtggtacttgagcctgcttcatcagaggggtagcatctcaccagacatgtgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cgggtgagtggtacttgagcctgcttcatcagaggggtagcatctcaccagacatgtgga 542
Query: 241 gaagggcaatactgtgtatccacagggcgaataaggcaggcacagattaatctgaatgca 300
|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 541 gaaggggaatattgtgtatccacagggcgaataaggcaggcatggattaatctgaatgca 482
Query: 301 cggggtagagcgttacaaccacaggagaaacctgagggactcaatctagtgaatcagact 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggagtagagcgttacaaccacaggagaaacctgagggactcaatctagtgaatcagact 422
Query: 361 tccgagatactggtgtcctgatgaaactgtcatctggttgaaaatgtgtcaggcgaccgg 420
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 421 tccgagttactggtgtcctgatgaaaccgtcatctggttgaaaatgtgtcaggcgaccag 362
Query: 421 caagaaagagcttcaagacacagcatctgaaaagctcagataattgtgtgaggtcggggg 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 361 caagaaagagcctcaagacacagcatctgaaaagctcagataattgtgtgaggtc-gggg 303
Query: 481 agggtgaatatggcagactgggttagctacttgtagctaaaccaaaatgcctgacagaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agggtgaatatggcagactgggttagctacttgtagctaaaccaaaatgcctgacagaaa 243
Query: 541 cgacttatagcaggaaaggttcattttagctcccgggttcagaagttctaactcatcatg 600
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 242 cgacttaaagcaggaaaggttcattttagctcccgagttcagaagttctaactcatcatg 183
Query: 601 gaggagagggccatggcggtacagcttatatcacagcattcagaanaca---gaggaatt 657
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 182 gaggagagggccatggcggtacagcttatatcacagcattcagaaaacagaggaggaatt 123
Query: 658 cagaaagggaccagggcaagacagtcccatagagc 692
|||||||||||||||||||||||||||||||||||
Sbjct: 122 cagaaagggaccagggcaagacagtcccatagagc 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space: 737242
Effective search space used: 737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
