BAC Information

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BAC

Clone NameMSMg01-388E01
Chromosome4 (Build37)
Map Location 103,194,735 - 103,194,965
singlet/doubletsinglet
Overlap genenone
Upstream genePde4b, Sgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1
Downstream geneLOC665451, LOC100039940, EG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388E01.T7 (MSMg01no388_e01.b1)MSMg01-388E01.TJ (MSMg01no388_e01.g1)
ACCAG490792AG490793
length455795
length of high quality
(start - end)
---245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no388_e01.b1 PHD_FILE: MSMg01no388_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:33 2005CHROMAT_FILE: MSMg01no388_e01.g1 PHD_FILE: MSMg01no388_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAAANNNNTTTTAAAAANNNNNNCTTTTTTAAAATTTTNNTTTNNCG
NNNAAAAACTTTTTTGAAAAGAAANNNCNNACCNCCCCTTTCCTTTTATT
GGGAAGAAGAATAAATGTATGGCNNTANNTATGTNNNNGTGGTGGGGTGG
GGTGGGGTGGGGGGGGTTTTTAATTGNNANAGGGGGTGGGGGGGGGGGGG
TGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTTNNATNNNAAAAGGT
GGGGGGGGGGTTNNTATTTANNNNNNNNNNNNNNGGGANNTTATGGNNNN
NNNNNNNNNNNGAGGGGGGGGGGTGNNNNNNNNNNNNNNNNNNNNNNNGG
NNNANAGTTANNNNNNNNNNNNNNNNNNNNNNNNTNNNNAGAGGGGGGNA
TTANNNNNNNNNNNNNNNTTGTGGGGGGGTGGNNNNNNNAAAAAAGTTTG
TTGGT
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTGTTCATTGACACATT
TTCCACCAAACTAAGCACAGAAAAGATCCCATTGATGAATGGCTGAGGAC
AAAATGTTCAAGTTTCTTGGTATTCTAATTAAGATCAGGGATTGAAAGTT
CTTGAGCCACATAAAGCCAAAGCCTGTAGAAAATGGGATGACTGCTGCAG
ATGCAAAGGAGTAGCAGAGCCTTAGAGAAGCTGCTGCAGGCTGGTGTGAG
ATAGAGGGGGGCAGTGGGGGGTGTTTTTTTTTTNCCCNCCCCCCCCNCCC
CCCCCCCCNCCCCCTTTTTTTCCTCCCCCCCCTCCCTTGCGGTCCTCCCT
TCNTTCTTTTTTTTTTTCCCCCCCCCTTTTTTTCCTCGCGCCTCTTTCCC
CCCCCCCTTTTTTTCTCTGGCTCTTCTCCCCCCCGTTTGTTCTTCCTCTC
CCCCCCGCCCCCTCTCTTTTTTGTTTCTCTCCTCTTCCCCCCCTCGTTCT
TTCTCCCTCTCCCTCCTCCCCTCCTTCTCTCTCCCCTCCCCCCCCCGCCC
CCCTCTTTTTCTCTTCCCCTCCTTCCTCCCCCCCTCCTTCCTCCGCCCCC
CTCCTCTCCCGCTCCTCTCTTTTCCTCCTCCCCTCTTTCCTGCGCCCCTN
CGCCCCCTTTTCTTCCCCTCCCCTTCTCCTCTTTCTCTCCCCCTCCTCTC
CCTTTTCCTCCTCCCTCTCTTCTCCCCGCCTTTCTCTCTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_e01.g1 MSMg01no388_e01.g1 CHROMAT_FILE:
MSMg01no388_e01.g1 PHD_FILE: MSMg01no388_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:33 2005
         (245 letters)



>mm_chr4_103194535_103195179
          Length = 645

 Score =  416 bits (215), Expect = e-121
 Identities = 227/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttgttcattgacacattttccaccaaactaagcacagaaaagatcccattgatgaat 60
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttgtttgttgacacattttccaccaaactaagcacagaaaagatcccattgatgaat 260

                                                                       
Query: 61  ggctgaggacaaaatgttcaagtttcttggtattctaattaagatcagggattgaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgaggacaaaatgttcaagtttcttggtattctaattaagatcagggattgaaagtt 320

                                                                       
Query: 121 cttgagccacataaagccaaagcctgtagaaaatgggatgactgctgcagatgcaaagga 180
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cttgagccacataaaaccaaagcctgtagaaaatgggatgactgctgcggatgcaaagga 380

                                                              
Query: 181 gtagcagagccttagagaagctgctgcaggctggtgtgagatagagggggg 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagcagagccttagagaagctgctgcaggctggtgtgagatagagggggg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)