XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGNGGAATTCTAT
CTACTTCCCTTTTTAGGTTTAGTTATTCCCCTTTCCTTTCATGTCTCTTC
TCTTACTTCACACTGTGTCTTTATACTTAGCTTTAAACCTGGATGCTGGT
AAAAGTGAGAGAGAAGCAGGTGAGCAAATCAGAAAAGAAAGGAAGACAGG
AGCAAGCACAGCATCAGGGACTCACATGACTCTGGAAAGAGTTGGCATGT
GCCAAAAAGTTCTAGTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAC
TATTGTCACGATTTCTGTCAGTGATCTATAAGGTGTGCCAGTATTAACAG
CCCTGAGATTGTTGGAATCTAAGAAACATAGTAACAATGTTAATGAAAGC
AAACAGTATTTGGTTAGATACTGTCTTGTTCTGAACAAATGTGTGAATCT
GAGTTCTCAGAATCAGATAAGGATCTCAAATTAGAAAGATAAATCACACT
GCACACCTTTTGAAAATCCCATGTGGATACCTGCCTACTACTGCAAAAGT
TTCCTAAACACAAACACACACACAAACACATGTACACACACATACACACA
TATACATACACACACATACATACATACACACATTTAACTCTATAAATTTT
GTTGAATATAATAATATTGTTGCCCCGTTACATGGCGACAAGGTCCTACC
CGAAGCCCCCCCCTTAAAACCCCCTCCCAAAAATGAGAAAGCCCCTTTGG
AAACGCTTCCCACAGAGGCCCCA

NNNCCGATGAAANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAATTTATATTGTAAGTAAAAGAA
ATAACGTGAAGTCCCTTTGCATGACACTTTTTTGATTTNGTTTTGTTTTT
TCTAGACANGTTTTCTCTGTGTATGATTGTGTATNNGTAGTGAGGTGGAG
GTTCGAGTGCNNAACTATNNNATNNNNNTATTTATTCTCCTCTTANNNNN
NTTAGGGAAATAAAAAAGATGNTTGTTGTTTATNNNNNNNNCCCCCNNCC
CCCCCCCCNNAAATTTTTTTTAAAAAAAAAAACCTTNNNNNNNNNNTCCA
AATTTTTTCCAACAAAAAAAAAAAAAAANNAAAANNNNAAACCCTTTTTC
CCCCCTCACCCTGTAGAAAAAAGCCTTCAAAACCTCAAACCTTCNAAAAA
NAAAGGCCCCCNCAAAAAAACCNCCCCAAAAAAAAAACCCCAAAAAAAAA
CACCCCCCTAAAAAAAAAAAAAAAAANACCCCACCCCCNCCCNNNNTNNC
CCCTACCCACACACCCCCCCATCCCCCCCCCAAAAAAAAAAAAAANAANA
ACAAAACTATACACCCACCACCCCCACCCAAACCACAATACACCCCCACC
CCCACCTCCCCNTAAACCACACACCNCCCCNNACACCCCCACATAACAAA
AAATAATTTATTTATTTTTTTATTTTTTTTTTTTTG

Query= MSMg01no388_f19.b1 MSMg01no388_f19.b1 CHROMAT_FILE:
MSMg01no388_f19.b1 PHD_FILE: MSMg01no388_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:41 2005
         (512 letters)



>mm_chr4_14322821_14323732
          Length = 912

 Score =  930 bits (481), Expect = 0.0
 Identities = 509/531 (95%), Gaps = 22/531 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctatctac---ttccctttttaggtttagttattcccctttcctttcatgtctct 57
           |||||||||||||   ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaattctatctacatttt---tttttaggtttagttattcccctttcctttcatgtctct 241

                                                                       
Query: 58  tctcttacttcacactgtgtctttatacttagctttaaacctggatgctggtaaaagtga 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tctcttacttcacactgtgtctttatacttagctttaaacctggatgctggtaaaagtga 301

                                                                       
Query: 118 gagagaagcaggtgagcaaatcagaaaagaaaggaagacaggagcaagcacagcatcagg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gagagaagcaggtgagcaaatcagaaaagaaaggaagacaggagcaagcacagcatcagg 361

                                                                       
Query: 178 gactcacatgactctggaaagagttggcatgtgccaaaaagttctagtgcagagagagag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gactcacatgactctggaaagagttggcatgtgccaaaaagttctagtgcagagagagag 421

                                                                       
Query: 238 agagagagagagagagaga----------------aactattgtcacgatttctgtcagt 281
           |||||||||||||||||||                |||||||||||||||||||||||||
Sbjct: 422 agagagagagagagagagagagagagagagagagaaactattgtcacgatttctgtcagt 481

                                                                       
Query: 282 gatctataaggtgtgccagtattaacagccctgagattgttggaatctaagaaacatagt 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gatctataaggtgtgccagtattaacagccctgagattgttggaatctaagaaacatagt 541

                                                                       
Query: 342 aacaatgttaatgaaagcaaacagtatttggttagatactgtcttgttctgaacaaatgt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aacaatgttaatgaaagcaaacagtatttggttagatactgtcttgttctgaacaaatgt 601

                                                                       
Query: 402 gtgaatctgagttctcagaatcagataaggatctcaaattagaaagataaatcacactgc 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtgaatctgagttctcagaatcagataaggatctcaaattagaaagataaatcacactgc 661

                                                              
Query: 462 acaccttttgaaaatcccatgtggatacctgcctactactgcaaaagtttc 512
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 acaccttttgaaaatcccatgtggatacctgcctactactgcaaaagtttc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)