BAC Information

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BAC

Clone NameMSMg01-388J06
Chromosome4 (Build37)
Map Location 25,023,795 - 25,197,640
singlet/doubletdoublet
Overlap geneFhl5, 1810074P20Rik
Upstream geneLOC664973, F730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63
Downstream genePrdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388J06.T7 (MSMg01no388_j06.b1)MSMg01-388J06.TJ (MSMg01no388_j06.g1)
ACCAG491041AG491042
length854743
length of high quality
(start - end)
173 (35 - 207)566 (70 - 635)
definitionCHROMAT_FILE: MSMg01no388_j06.b1 PHD_FILE: MSMg01no388_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:56 2005CHROMAT_FILE: MSMg01no388_j06.g1 PHD_FILE: MSMg01no388_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,197,478 - 25,197,640)(25,023,795 - 25,024,360)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAAGT
ACCTGCCTTTCCTCCGGACCAGGGATGAGAGAAAGGTTATTTTTATTTTA
TTTTGTTTTTTGGAGACAAAAATAGGACTGGTGAAGAAAAGATGGGGCTA
GAAGTGGCGATCAGAGAAAGAGAGGTGGTTTGGTTTGGTTTGGTTTGGTT
TGGTTTTCCTCTCCCCCCCCTTCTCCCTCTCCCTCCCTTTTCTCCTTTTT
CCTCCTCCTCCTTTCCCTTCCCCCCCCCTCTTCCCCCCCCCCTTCCCTCC
TCCTCCTTCCCTCCTTCTCTTTCCCCTCCCCTCCCCCCCCCCCCTCCCCC
CCTCTCCCTCCCCCCCCTCCCCCCCCCTCCCTCCCTTTCCCCTCCTTCTT
CTTTTTTTTCCCCCCCCCCCCCGCCTTTTCCTCTCTCCTCCTCTCCTTCC
CCCCCCCCTCCTCCCCCTCCTTTCTCTCCCCTCTTCCCTTCTTTCCCCTC
CCTCCCCCCTCCCTTCTCTTTCTCCCCCCCCTTTTTCCTTTTTTCTCCCC
TCCTCCTCTCCTCCCCTCTCCTCCTCTTCCCCTCTCCCCCCTCTTCTCTC
CCCTCCTCTCCTCCCTCTCTTTTTTTTCCTCCCTCTCTTTCCTCCCTTCC
CTCTTTCCTTCTCCCCCCCCCCCTTCTCCTCCCCCTTCCCCCTCCCTTCC
CCCCTCTCCTCTTCCCCTCCCCGTTCCCCCTCTCCTTCTCTTCTCCTCTC
CTTCTCCTCCTTTCCCCGCTTCCTTTTCCCCTTTCTCTCCCTCCCTCCCC
TCCTCTTTCCCTTCCTTCTCTCCTTCTCCCCTCTTTTCCTCCCCTATCTC
CCCN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTAAAAAATAAAGAAAGAGCTTCTTTTTG
GTTATGTCATCAAAGGTATCAATGATGGAACTCCTACAAGCATTGTCAGC
ACAAAATGAGAATAATTTGTTAAGTCAAGTAAATGGGATATCAATCCTCT
AATTAAAACAAATTGATTTCAACAATGTTTTCAGACAGAAATAACGTTGT
GCAGGATAGGTGTGGTGGTTTGAATATGGTTGGCCCAGGGAGTGACGCTA
TTAGGAGGTGTGGTCTTGTTGGAATAGGTGTGGCTTTGTTGGAGGAAGTG
TGTCACTTTGGAGATGAGCTTTGAGGCCCTTCTCCTAGCTGCCTGGAAGC
CAGTTGTCTCATGCTTTGCCTTCTGGACAAAATGTAGAACTCTCAGCTCC
TCCAGCACCAAGCATGTTGCCATGCTTCCCACCATGATGATAGTGGACTG
AACATCTAAAACTGTAAATCAGTCTCAATTAAGTGTTGTTCTTTATAAGA
GTTGCCTTGGTCATCATGTCTCTTCCCAGCAATGGAAACTCTTAGAGAAT
ATGAAAATACAATCTCTTTAAATTTCCCATTGATTGCAAAGGAAACAGAC
CATTTTAAAGTTCATTTAAGAAGCCTGGATATTTAAATTTTTGTTAAAAA
AGACAGTCCCCACTGTATTCCCAAAAAAAATATTTTTTCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_j06.b1 MSMg01no388_j06.b1 CHROMAT_FILE:
MSMg01no388_j06.b1 PHD_FILE: MSMg01no388_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:56 2005
         (173 letters)



>mm_chr4_25197300_25197872
          Length = 573

 Score =  284 bits (147), Expect = 2e-81
 Identities = 159/163 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaagtacctgcctttcctccggaccagggatgagagaaaggttatttttattt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaattcacaagtacctggctttcctccggaccagggatgagagaaaggttatttttattt 282

                                                                       
Query: 65  tattttgttttttggagacaaaaataggactggtgaagaaaagatggggctagaagtggc 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 281 tattttgttttttggagacaaaaataggactggtgaagaaaagacggggctagaagtgga 222

                                                      
Query: 125 gatcagagaaagagaggtggtttggtttggtttggtttggttt 167
           ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gatgagagaaagagaggtggtttggtttggtttggtttggttt 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no388_j06.g1 MSMg01no388_j06.g1 CHROMAT_FILE:
MSMg01no388_j06.g1 PHD_FILE: MSMg01no388_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:57 2005
         (566 letters)



>mm_chr4_25023595_25024560
          Length = 966

 Score = 1017 bits (526), Expect = 0.0
 Identities = 556/566 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaaaaaataaagaaagagcttctttttggttatgtcatcaaaggtatcaatgatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaaaaaataaagaaagagcttctttttggttatgtcatcaaaggtatcaatgatgga 260

                                                                       
Query: 61  actcctacaagcattgtcagcacaaaatgagaataatttgttaagtcaagtaaatgggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcctacaagcattgtcagcacaaaatgagaataatttgttaagtcaagtaaatgggat 320

                                                                       
Query: 121 atcaatcctctaattaaaacaaattgatttcaacaatgttttcagacagaaataacgttg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 atcaatcctctaattaaaacaaattgatttcaacaacgttttcagacagaaataacgttg 380

                                                                       
Query: 181 tgcaggataggtgtggtggtttgaatatggttggcccagggagtgacgctattaggaggt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 381 tgcaggataggtgtggtggtttgaatatggttggcccagggagtgatgctactaggaggt 440

                                                                       
Query: 241 gtggtcttgttggaataggtgtggctttgttggaggaagtgtgtcactttggagatgagc 300
           |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gtggccttattggaatagatgtggctttgttggaggaagtgtgtcactttggagatgggc 500

                                                                       
Query: 301 tttgaggcccttctcctagctgcctggaagccagttgtctcatgctttgccttctggaca 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tttgaggcccttctcctagctgcctggaagccagttgtctcatgttttgccttctggaca 560

                                                                       
Query: 361 aaatgtagaactctcagctcctccagcaccaagcatgttgccatgcttcccaccatgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgtagaactctcagctcctccagcaccaagcatgttgccatgcttcccaccatgatg 620

                                                                       
Query: 421 atagtggactgaacatctaaaactgtaaatcagtctcaattaagtgttgttctttataag 480
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 621 atagtggactgaacatctaaaactgtaagtcagtctcaaataagtgttgttctttataag 680

                                                                       
Query: 481 agttgccttggtcatcatgtctcttcccagcaatggaaactcttagagaatatgaaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttgccttggtcatcatgtctcttcccagcaatggaaactcttagagaatatgaaaata 740

                                     
Query: 541 caatctctttaaatttcccattgatt 566
           ||||||||||||||||||||||||||
Sbjct: 741 caatctctttaaatttcccattgatt 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)