BAC Information

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BAC

Clone NameMSMg01-389H06
Chromosome4 (Build37)
Map Location 57,806,616 - 57,806,865
singlet/doubletsinglet
Overlap genenone
Upstream geneIkbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513
Downstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389H06.T7 (MSMg01no389_h06.b1)MSMg01-389H06.TJ (MSMg01no389_h06.g1)
ACCAG491705AG491706
length770783
length of high quality
(start - end)
249 (75 - 323)405 (79 - 483)
definitionCHROMAT_FILE: MSMg01no389_h06.b1 PHD_FILE: MSMg01no389_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:03 2005CHROMAT_FILE: MSMg01no389_h06.g1 PHD_FILE: MSMg01no389_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGTTATAAATTGCNGGCGCTAAACGACTCACTAATCCCACAGGATC
CGCGGAATTCACTCTCTACCCAGGGGCTGGTCTCAAACTCTGAGACCATC
TGCTTCTGCCTCCTGATGCTGGCATTAAAGGCATGCGCCTCCCTGTAGGC
CTTGGCTGCCATTTTCAAGTGTTTTGTGTCTCTGTTACTCTGTGTTGACA
ATTTCAACTCAGCATCCTGTTTGTGAGACTCATTATCAGGTACAGAGACA
CCGTGGTGACTTTTGTTTATCCAACAGTTGATAGTGAAAGCACACAGAGC
CTGACTTTCTTATCCTTGGGAAAATAGAGGAGGGAGGAGAAACCGGCAGG
CACCCAGTCTTTGAGTCTCTAACTGAAGAGTTGGCTCCTGGCAGAGCAGG
TGGAGTGGATGCCCCACTTGCTCCCCTTTGATTAACAGCGATCCACTGTA
CTTCTCTCACCTAACGACTTCATATCCGTATTACCTTAATCCTAGATAGC
AAAAGTCCCCTCTGCGTTCTACCATCCACCACACTACTGCCCACCTTTCC
TGCGCTCCCTCGTATATCACAATCCCCCGCCCGCCCCCTCCCCCTTTCTT
CCCCCCCTCCATGCCTAATCCCCTCCCTTCCTTTACACCCTTTCCCCTCT
CCCTTCTCTTCCCTTTTTTCCCTTTTTTTTTCCCTTTTTTTTCTCCCCCC
TCCCTCCCCCCCCATACTTTGCCCTTTCTTCCCCCTTCCTTCCCTATCCT
TCCCCTTCCCCTCCCTTCCG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCCAT
TTTTAATAGAGTTATTTGGTTTTCTGGAATCCAACTTCTTGAGTTCTTTA
TATATATTGGATATTAGTCGCCTATCAGATTTAGGATTGGTGAAGATCTT
TTTTTCAATCTGTTGGTTGCCGTTTTGTCTTATTGACGGTGTCCTTCGCC
TTACAGAAGCTTTACAATTTTATGAGGCCCCATTTGTCGATTCTTGATCT
TACAGCACAAGCCATTGCTGTTCTGTTCTGGAATTTTTTCCCGTGTCCAT
ATCTTCAAGGCTCTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTG
GTTTTATGTGGAGTTCCTTGATCCACTTAGACTTGAGTTTTGTACAAGGA
GATGAGAATGGATCGGTTTGCATTCTTCTACATGATAACAACCAGTTGCG
CCAGCACCATTTGTTGAATAAGCTATCTTCCTTCCACTGGATGGTTTTAG
CTCCTTTGTCCAACATTATGTGTCCCTTAGGTTTGTGGGGAATACCTATT
GTGGTTTCCCATTCTGCTCCCTTTTTTCTACCTTGTCTTGTCGGTTGACC
CCTCAATTTTGCGTTCTTTCATCTCTTTTGCTCCTGTAACCTGTACCCAG
TTTTCTTTTACTGTTGCCCCTATTGCCAAGGTTTCTTTTTATCTCGTTCT
GAAACCCCATATACCTTCTTTTACTTTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_h06.b1 MSMg01no389_h06.b1 CHROMAT_FILE:
MSMg01no389_h06.b1 PHD_FILE: MSMg01no389_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:03 2005
         (249 letters)



>mm_chr4_57806417_57807065
          Length = 649

 Score =  445 bits (230), Expect = e-129
 Identities = 245/250 (98%), Gaps = 1/250 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctggtctcaaactctgagaccatctgcttctgcctcctga-tgctggcattaaaggca 59
           ||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct: 200 ggctggtctcaaactctgagaccatctgcctctgcctcctgagtgctggaattaaaggca 259

                                                                       
Query: 60  tgcgcctccctgtaggccttggctgccattttcaagtgttttgtgtctctgttactctgt 119
           | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 tccgcctccctgtaggccttggctgccattttcaagtgttttgggtctctgttactctgt 319

                                                                       
Query: 120 gttgacaatttcaactcagcatcctgtttgtgagactcattatcaggtacagagacaccg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttgacaatttcaactcagcatcctgtttgtgagactcattatcaggtacagagacaccg 379

                                                                       
Query: 180 tggtgacttttgtttatccaacagttgatagtgaaagcacacagagcctgactttcttat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggtgacttttgtttatccaacagttgatagtgaaagcacacagagcctgactttcttat 439

                     
Query: 240 ccttgggaaa 249
           ||||||||||
Sbjct: 440 ccttgggaaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)