BAC Information

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BAC

Clone NameMSMg01-389L21
Chromosome4 (Build37)
Map Location 35,036,653 - 35,037,086
singlet/doubletsinglet
Overlap geneMobkl2b
Upstream geneSpaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389L21.T7 (MSMg01no389_l21.b1)MSMg01-389L21.TJ (MSMg01no389_l21.g1)
ACCAG491925AG491926
length795761
length of high quality
(start - end)
289 (71 - 359)434 (81 - 514)
definitionCHROMAT_FILE: MSMg01no389_l21.b1 PHD_FILE: MSMg01no389_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:27 2005CHROMAT_FILE: MSMg01no389_l21.g1 PHD_FILE: MSMg01no389_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTACTAATTCCTCTGCTCCTGGGCTTGCTTTTTTTTTTTTTTAAA
TTGGGAGACTTTTAATAACTGTTTCTATTTCTTTAGGGGTTTTGGGACTA
TTTATATGGTTTATCTGATCCTGATTTAACTTTGGTATTTTGTATCTGTC
TAGAAAACTGTCCATTTCATCCAGATTTTCCAGTTTTGTTGAATCTAGGC
TTTTGTAGTAGGATCTGATGATTCTTTGAATTTCTGAATTTTTTGTTGTT
ATATCTCCCTTTTCTGATTTTGTTATTTTGAATACTGTCTCTGTGCCCTC
TGGTTAGTCTGGCTATGGGTTTATCTATCTTGTTGATTTTCTCACAGAAC
AAGCTCTCGATTTTGTTGACTCTTTGTATACCTCCTTTTGCCCCTACCTG
GCTGACTTCAGCCCTGACTTTGACCTTTCCCTGCCCCCTACTCCCCCTGA
CTGCATTCGCTTCCTTTCCGCCCTCGACCCTTCCCACGTTTTCCCCTCGC
TGTCCGCCTCATGCTCTCCCCACGCCCTTCTTTGTAGCCCCCTCCTATCC
CCCCAGCTTTCCTTTCCACCTCCCGTTTCTTTCGCCTCCCCCCCCAGTTC
CGCCCTTTTCGTCCTCTTCCCTTTCCTCTATTCCTCTCCGCGCCCTCCTT
CTTTCCTTTCTCTTTCCCCCCCCCTCCCCTCTTCTCTCCCCCTTCCCTCC
CCTCCTTTCGTCCCCCTCCCGTCCCGCCTTCCCCTTTTTCTCTTN
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATAAACAGCAGAAAACT
GACAGCAGCTCCACGTGTGCTCCATATTTTCTGCTTAATAGATCAACTTT
AGCAATAAAACAAACGCGTGGTGAAACTAAGCGGAGAGAACTCTGCTGGG
CTGTGAGGCAATGTTGACAAAGTCGCTAAGCAACCCTGGCAAGGCAACTT
TGTATTTTTCTTTCCCTATTGATGTCTTCTGCCTCATTAGTTGAAAAATC
AGAGCCCTTGCCAGGGATAAAGGAAGAAATGATACAACTCTCCCACTGAC
TCCTGAGAAATGCATCTTCTCGGGCAGCCAGCATGTCTTAGAGGCCGACT
CGGTGTGGCAGAAGGGTGACAGCAACAGGCAGAGAGGTACAAGGCTGATT
AATGTTAGCAATCAGAAGTGTGTGGTAGCAGAGGATGCCTCTGGACAGGA
CGATTCACAACAGAAAAGCCACAAGAAAAATGCCTCCAAGCACCCGAAAC
ACAGAGGAGGTAGAATCTGGCCATTGTCTTGGCGGGCATCTGAGAAGCTG
CAATGGCATTGGGCTCAGAGCTGACCTCACCTGAGATTTGTGAACGCCCA
AAAAAGGACATGAATGAAGAATAGTTTGGCCTAACCAAAACCCGCCAGTT
ATACCCACGGGCGGTTTCATTTTGAACCCTCGGGGAAACCCCCCCGGGTG
GCTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_l21.g1 MSMg01no389_l21.g1 CHROMAT_FILE:
MSMg01no389_l21.g1 PHD_FILE: MSMg01no389_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:27 2005
         (434 letters)



>mm_chr4_35036453_35037286
          Length = 834

 Score =  762 bits (394), Expect = 0.0
 Identities = 424/434 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaataaacagcagaaaactgacagcagctccacgtgtgctccatattttctgcttaata 60
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aaaataaacaccagaaaactgacagcagctccacgtgtgctctatattttctgcttaata 260

                                                                       
Query: 61  gatcaactttagcaataaaacaaacgcgtggtgaaactaagcggagagaactctgctggg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gatcaactttagcaataaaacaaacgcatggtgaaactaagcggagagaactctgctggg 320

                                                                       
Query: 121 ctgtgaggcaatgttgacaaagtcgctaagcaaccctggcaaggcaactttgtatttttc 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgaggcaatgttgacaaagtcactaagcaaccctggcaaggcaactttgtatttttc 380

                                                                       
Query: 181 tttccctattgatgtcttctgcctcattagttgaaaaatcagagcccttgccagggataa 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcctattgatgtcttctgcctcattagttgaaaaatcagagcccttgccagggataa 440

                                                                       
Query: 241 aggaagaaatgatacaactctcccactgactcctgagaaatgcatcttctcgggcagcca 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 aggaagaaatgaaacaactctcccactgactcctgagaaatgcatcttctctggcagcca 500

                                                                       
Query: 301 gcatgtcttagaggccgactcggtgtggcagaagggtgacagcaacaggcagagaggtac 360
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatgtcttagaggcagactcggtgaggcagaagggtgacagcaacaggcagagaggtac 560

                                                                       
Query: 361 aaggctgattaatgttagcaatcagaagtgtgtggtagcagaggatgcctctggacagga 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggctgattaatgttaacaatcagaagtgtgtggtagcagaggatgcctctggacagga 620

                         
Query: 421 cgattcacaacaga 434
           ||||||||||||||
Sbjct: 621 cgattcacaacaga 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)