BAC Information

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BAC

Clone NameMSMg01-390L09
Chromosome4 (Build37)
Map Location 57,443,904 - 57,444,285
singlet/doubletsinglet
Overlap genenone
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973
Downstream geneLOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390L09.T7 (MSMg01no390_l09.b1)MSMg01-390L09.TJ (MSMg01no390_l09.g1)
ACCAG492658AG492659
length749748
length of high quality
(start - end)
402 (80 - 481)64 (260 - 323)
definitionCHROMAT_FILE: MSMg01no390_l09.b1 PHD_FILE: MSMg01no390_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:42 2005CHROMAT_FILE: MSMg01no390_l09.g1 PHD_FILE: MSMg01no390_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGCACCA
CCGCGGAATTCTACATCTTCCCCTGAAGGCTGCTAGAAGACTGGCTTCTA
GGCAGCTAGGGCAAGGGTCTTAAGCCCACACCCACAATAACACACCTACT
TCAACAAGGCCACAACTACTCCAACAGAGCCACACCTATTCCAACAGGGC
CACACTTTCTAATAGCACCACTCCCTGGGCCAAGCATATACAAATCTTTG
CATAGACCTTATGATGAACCGTGGCCATGGGCCTGGGGACCCAGAAGCCT
GAATGCTAAAGCTTGTGACATGGCATGGGCCAAGCTTTGATCCATGGCTG
CCTTTCAGTATTCATTTTTCTCTGTTCGTGGGAGTACAAGCACCTAACGT
GGGCTGTATTCCTGGCTGTGCTGAATGACGTCTGCTTTGTCCAGTCTCTC
TGGAAACTTACTTGGGACACCATATGACTACACTGTGGACAAAGACTTGA
GTGGAGGAGCCTGAGAACCTTCCTGAGAGCTGACTGGCACCACAGGTCCT
TGGCTTTTCCTTGCTCCCTCTCCCCACATGACGGCTGAAGCATAGACAGG
AAGACTGGAGCCGATACCGCCCAAAAGAAATTATTTCCCAAAGAAGCCCC
TCGCACCCCAACTTTCGAAAACCCACGGCCCCCCACCCTTCTTGAAAACC
CCTGGTAAACTCACCCCCGAACCCACCACCCCCCAACCCTTTTAACCCC
NNTTCTATGAAGTGGGAGGNCTGGNGGNCGCCTGGCTTTCCACACCAGGN
GACACANAGAAGGATGACGGNACTCGCCAGNCAGAANGAGAGNNCGGNAN
GGACNNAGAGNNNACNNATTTTTACCCCAGGCCGCNNNAAGNCCAANACC
NNCCAGNAACCACCCAGGAGGGCGGGGCACANGAGNNANAGGCAGCCAAG
AGGACNAGGGAGAGAANNGCNANCNCNNNANNCGGNNGCNGNGACNAGNN
NNAATCTTCAGGGGCCATTAGTACGATGGTGAGTTTCTCAGTCCACGGAA
GATTGTCCTGAATACGTATAACTTTTTTTTTCTGATAGATGCTAAACCCT
GCCCCTTCCCGTTTTTTCTCCCTGGTGCCATTCTTCCAAACTAGGCTTTA
GAGCTATTGGCTCAGCCCTTTAAGTTAAAAATCACACAAACACACTCCCT
GCCATCAGTGAACAGAACTTAGGCTTAGGGGGATGGTAGTCTTTGCTGTT
TCTCACAGCTCTTTCTTCACCCAGCTATCTGAAGCAGAGAAGGCAGAGAC
AAAGAGGCTTTGCTTGCCCAGCTTTACTCAGTCTTCATGGCAGCCGGGCC
AAGATCCGAATTTTTAACGCTAGATGTACGAAACCCACTAGGCTCCCCAA
CCGGAGAAATTTCCTTCGCTCGGGAAGCCCAGGGGCCTTCAAAGAAGACC
TTCAGGTCCCTAAGCCCTCATATTCAAAGGAACGCCCCGGTTCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_l09.b1 MSMg01no390_l09.b1 CHROMAT_FILE:
MSMg01no390_l09.b1 PHD_FILE: MSMg01no390_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:42 2005
         (402 letters)



>mm_chr4_57443684_57444485
          Length = 802

 Score =  598 bits (309), Expect = e-175
 Identities = 370/403 (91%), Gaps = 22/403 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctagaagactggcttctaggcagctagggcaagggtcttaagcccacacccacaata 60
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 221 ctgctagaagactggcttctaggcagctagggcgagggttttaagcccacacccacagta 280

                                                                       
Query: 61  acacacctacttcaacaaggccacaactactccaacagagccacacctattccaacaggg 120
           ||||||||||||||||||||||||||||||                    ||||||||||
Sbjct: 281 acacacctacttcaacaaggccacaactac--------------------tccaacaggg 320

                                                                       
Query: 121 ccacactttctaatagcaccactccctgggccaagcatatacaaatctttgcataga-cc 179
           | |||||||||||||||||||||||||||||| |||||||||||||| | |||| || ||
Sbjct: 321 ctacactttctaatagcaccactccctgggccgagcatatacaaatcatcgcat-gaacc 379

                                                                       
Query: 180 ttatgatgaaccgtggccatgggcctggggacccagaagcctgaatgctaaagcttgtga 239
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttatgatgaactatggccatgggcctggggacccagaagcctgaatgctaaagcttgtga 439

                                                                       
Query: 240 catggcatgggccaagctttgatccatggctgcctttcagtattcatttttctctgttcg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catggcatgggccaagctttgatccatggctgcctttcagtattcatttttctctgttcg 499

                                                                       
Query: 300 tgggagtacaagcacctaacgtgggctgtattcctggctgtgctgaatgacgtctgcttt 359
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgggagtacaagcacataacttgggctgtattcctggctgtgctgaatgacgtctgcttt 559

                                                      
Query: 360 gtccagtctctctggaaacttacttgggacaccatatgactac 402
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtccagtctctctggaaacttacttgggacaccatatgactac 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)