BAC Information

Click to search

BAC

Clone NameMSMg01-391F12
Chromosome4 (Build37)
Map Location 86,126,076 - 86,316,340
singlet/doubletdoublet
Overlap gene4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp
Upstream geneA930009N24, LOC668052, Adamtsl1
Downstream geneEG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F12.T7 (MSMg01no391_f12.b1)MSMg01-391F12.TJ (MSMg01no391_f12.g1)
ACCAG493139AG493140
length759763
length of high quality
(start - end)
168 (65 - 232)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no391_f12.b1 PHD_FILE: MSMg01no391_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:31 2005CHROMAT_FILE: MSMg01no391_f12.g1 PHD_FILE: MSMg01no391_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,126,076 - 86,126,242)(86,316,096 - 86,316,340)
sequence
CGGCGCTAAACGACCCCTATTCCCACAAATCCGCGGAATTCCCGAATTCA
CAATAAAGCTAAACACTAATAAAACCTATTTCCAGGCTGAAACCTGGGGC
AGCATTACCGAGCCATGCTTGAGTAGCAAAGGTAACATGCTCCACTGTAA
ACTGTCTTGCATGAATTATACACAGGGTTGTCCATAAACCCAAAGCAGGT
CCTGAGCATGCTTGGTGGGATGAAGGACTGGTGAAGCATAAGAATTAGTC
TCCTTGGGACTGCAAGTGGGAAACGGGAGATGCTTCGGCTGAACTCCTAT
TTTTTTCTCTTGGTACATCTTAAAATATATCCTAGTAGCAAGAACTACTG
CAGCCTGACCTGCCTTCCTAGTAGCCTCACTGCGCCTGAACAGCAAACCC
ACGCTGAGGGACCCCAGCATCTGCAAGTCAATTATAAAGGTGCGAGTTAT
GCCATCGACAGGCCGACAACAAGCTAATAACAAACCACCGGTCAGGTTCA
CACTTTTCACCTTCTTATATTACCGCCGCCACCTCTCCCCACTCATCCAA
TTGCCCCACCACTCTATTGACACCCCACACCCCCCATGAGCTGCACCCCA
CCATTGTTAATGTCCCCCCCCCCCCCCCGCCAATTTTTTTTTCTCCGCAA
CCCCCCCCCCTCCCCATAGTTTCCCCTCTCCCCCCCCCCCCACCTCCCTT
ATTCCCCCTCCCACCTTTCTTTCTCCTCTCCCCCGCATTTAAATACTTCC
CTCCCCTCG
NCGATGAAGNTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCCCGCGCAATTCCACACATCTTTGTAACTTTCTTGACTTA
AAGTAAAAGGTTAGAACCCGAACTTCCAGTTTTGAAGTGGTCTTTTCTGA
AGACTCTGGTTAATTTGTCTGCATTTTCCAAAACCCCAAGACGCCCTGCA
TCTTTGCAATGCAGCTTTCAGGACCCCTGACCTAAGTCAGACAGTATAAG
GCCTCGCCCCGGCTGGCTCCTGCTCTTCTTGTACTGATCTGGGATCTCAG
GGCACTGGGCTCAGGTAATCAAGGAGGCCCCCGATATTGTGGCACCAGGT
TGGGGTTCCCACGCCCTCATCCCCAATGAGTGGCCCCAGAGTCCCAGTCC
AGCCCAGCACAGGGTTCAGCGGTCCCAGGCAGCTGGGCTATCACGTGGCT
CGGAGGCTTGGGCGGTGCAGTCAAGCGATATTTTAACAGTCGTTCTGGCC
GCTTTGCTGTGTGGTGATCTGGACCGTGCGGACTTGCCCGCCCCTCAGTT
CTCCTGTTAGGTACGCCCTGCCCCTATTTTGGCCCTCTGCCCCTGCTGTT
CTGTCTGGATCGCCCCTGTAATCCGTCCCATGGGTCCTTCTTTTTTTTTT
TTTTCCCTTTTCCTCTCCCTCTTTCCCTCCCCCTTGCCCCTTTCTATCTC
CATTTTCTCCCCTCTCCCTTTCCCCCTTTTTCCCCTTTCTTTTTTTCTCC
CCTCCCTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f12.b1 MSMg01no391_f12.b1 CHROMAT_FILE:
MSMg01no391_f12.b1 PHD_FILE: MSMg01no391_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:31 2005
         (168 letters)



>mm_chr4_86125876_86126443
          Length = 568

 Score =  308 bits (159), Expect = 2e-88
 Identities = 165/167 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaataaaacctatttccaggctgaaacctggggcagcattaccgagccatgcttgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaataaaacctatttccaggctgaaacctggggcagcattaccgagccatgcttgagt 260

                                                                       
Query: 61  agcaaaggtaacatgctccactgtaaactgtcttgcatgaattatacacagggttgtcca 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 agcaagggtaacatgctccactgtaaactgtcttgcatgaattatacacggggttgtcca 320

                                                          
Query: 121 taaacccaaagcaggtcctgagcatgcttggtgggatgaaggactgg 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacccaaagcaggtcctgagcatgcttggtgggatgaaggactgg 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no391_f12.g1 MSMg01no391_f12.g1 CHROMAT_FILE:
MSMg01no391_f12.g1 PHD_FILE: MSMg01no391_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:31 2005
         (245 letters)



>mm_chr4_86315896_86316540
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccacacatctttgtaactttcttgacttaaagtaaaaggttagaacccgaacttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attccacacatctttgtaactttcttgacttaaagtaaaaggttagaacccgaacttcca 386

                                                                       
Query: 61  gttttgaagtggtcttttctgaagactctggttaatttgtctgcattttccaaaacccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttttgaagtggtcttttctgaagactctggttaatttgtctgcattttccaaaacccca 326

                                                                       
Query: 121 agacgccctgcatctttgcaatgcagctttcaggacccctgacctaagtcagacagtata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 325 agacgccctgcatctttgcaatgcagctttcaggacccctgacctaagtcagacagcaga 266

                                                                       
Query: 181 aggcctcgccccggctggctcctgctcttcttgtactgatctgggatctcagggcactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcctcgccccggctggctcctgctcttcttgtactgatctgggatctcagggcactgg 206

                
Query: 241 gctca 245
           |||||
Sbjct: 205 gctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)