BAC Information

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BAC

Clone NameMSMg01-391J14
Chromosome4 (Build37)
Map Location 21,610,468 - 21,610,867
singlet/doubletsinglet
Overlap genePrdm13
Upstream geneE130310K16Rik
Downstream geneCcnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J14.T7 (MSMg01no391_j14.b1)MSMg01-391J14.TJ (MSMg01no391_j14.g1)
ACCAG493333AG493334
length761753
length of high quality
(start - end)
424 (61 - 484)242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no391_j14.b1 PHD_FILE: MSMg01no391_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:52 2005CHROMAT_FILE: MSMg01no391_j14.g1 PHD_FILE: MSMg01no391_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCGCTAAACGACTACTATAGTCACACATCCGCGGAATTCAGTTTCCCA
CCGCTAAACAGAAAGATTCTTCAGGCCTGTGTTCACCTTCCACAATCCAG
GAGAACTGGACTCTACTCTTGCTCACCCTCGCTGTTGGGGAGACCTCAGA
GCAGTACCTTTCTCATCATGCGTTGGAGTCGCAGTTGTAGGGATGTCAAA
CCACTGAGCCAAGGAGTTAGAATACCACACAGTCAGCTCTTCCCCAGGCT
GGACGTCTCGCAATGCCCGATAGAAGATCTAGGATACAAAAATAAATAAA
TAAATAAATTTTTAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AGGTGCTGTGTTATTTCCTGGATGACTGGGAATAAAGATTGAAAGACTGG
CACTGCGATCCTGGAGATGCTGCTGGATAACTTGGAATCTCATCCTTCAT
CTTTTAAATGACAAAGCANAAGTATCTTTCTTACAAGGTCATTGGGATGT
TGAGGAGAGAATTCTTGCCTTTCAAAGTTCTTTGCTCATGAAATGCTTGG
CTGCCTTANGGACCGTTAGTAGATGACACTGGAATTATTACCAATGAGGG
GCTCTGACAGAACCTGCCCTCCTGTAAGGCTGCCCTAGCTTTCCCAGTCT
TGTTCTGGGGATTCCCGCCGGCCCGGATTACCCTATCTCTTCCCAGGGGG
GCCCCGGATTTGTCCCCCCCCTCCCTTTCATTATGGCGCCTGGCAAAAAC
AACTGGGCCCN
NNTTCGATGAAGTGGGAGGCCTGGCGGNCGCCTTTTCAACAAATTTAGGT
GAACTATAGATTTACCCGCGCAATTCAGATGGACATCAGAACATCAGAAA
GCCTTTGAAAATATTAAGGAGGCCCTGCTGACTGCTCGAGCCTTGGCATT
GCCAGATCTAACCAAGCCCTTCATCCTCTATGTTGATGAGAGGGTGGGGG
TGGCCAGAGGAGTTCTTACTCAGGCTCTAGGGCCATAGAAGAGGCCATTG
TCATATTTGTCTAAGAAGCTGGACCCAGTGGCCAGCAGATGGCCCACATG
TTTAAAGGCCGTTGTTGTAGTTGTCCTACTCATTAAGGATGCTGACAAAT
TAACTCTGGTACAGCAAATAATTGTGGTAGCCCCCCACTCTCTTAAAAGC
ATTATCTGCCAGCCCCCACACCGATAGATGACAAATGCCCGGATGACTCA
CTACCAGAGTCTGCTGCTGACTGAATGGGCCGTGCTTGCTCCTCCTGCTA
TTCTCAACCCTGCCTCCAAAGTGATCTCCTAGTATAAGGTAAGAAGATGG
CCGCTTTCCCATCCTCCCAAGCACCCCACCTAATTTTTCATCAGTCTCTC
CTCTTACCACCCCTGCCTGATTCTACCCCTGTCACATTCCCTTTTTTTTT
ATTTGGTACACAACACGGTTCCCGTTAAATTCTACCTATTGTACCGGCCC
TTCCCCTTCCCCCTCCTCCCCTATGCTTGCCTTTTACCCCCTTTCCTTCA
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j14.b1 MSMg01no391_j14.b1 CHROMAT_FILE:
MSMg01no391_j14.b1 PHD_FILE: MSMg01no391_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:52 2005
         (424 letters)



>mm_chr4_21610268_21611091
          Length = 824

 Score =  687 bits (355), Expect = 0.0
 Identities = 395/424 (93%), Gaps = 24/424 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagattcttcaggcctgtgttcaccttccacaatccaggagaactggactctactctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagattcttcaggcctgtgttcaccttccacaatccaggagaactggactctactctt 260

                                                                       
Query: 61  gctcaccctcgctgttggggagacctcagagcagtacctttctcatcatgcgttggagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaccctcgctgttggggagacctcagagcagtacctttctcatcatgcgttggagtc 320

                                                                       
Query: 121 gcagttgtagggatgtcaaaccactgagccaaggagttagaataccacacagtcagctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagttgtagggatgtcaaaccactgagccaaggagttagaataccacacagtcagctct 380

                                                                       
Query: 181 tccccaggctggacgtctcgcaatgcccgatagaagatctaggatacaaaaataaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccaggctggacgtctcgcaatgcccgatagaagatctaggatacaaaaataaataaa 440

                                                                       
Query: 241 taaataaatttttaaataaataaataaataaataaataaataaataaataaggtgctgtg 300
           |||||||||                        |||||||||||||||||||||||||||
Sbjct: 441 taaataaat------------------------aaataaataaataaataaggtgctgtg 476

                                                                       
Query: 301 ttatttcctggatgactgggaataaagattgaaagactggcactgcgatcctggagatgc 360
           |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 477 ttatttcctggatgactgggaataaagattaaaagactggtactgtgatcctggagatgc 536

                                                                       
Query: 361 tgctggataacttggaatctcatccttcatcttttaaatgacaaagcanaagtatctttc 420
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 537 tgctggataacttggaatctcatccttcatcttttaaatgacaaagcaaaagtatcttcc 596

               
Query: 421 ttac 424
           ||||
Sbjct: 597 ttac 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)