BAC Information

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BAC

Clone NameMSMg01-391P08
Chromosome4 (Build37)
Map Location 78,217,376 - 78,217,608
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391P08.T7 (MSMg01no391_p08.b1)MSMg01-391P08.TJ (MSMg01no391_p08.g1)
ACCAG493607AG493608
length916766
length of high quality
(start - end)
81 (67 - 147)242 (80 - 321)
definitionCHROMAT_FILE: MSMg01no391_p08.b1 PHD_FILE: MSMg01no391_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:20 2005CHROMAT_FILE: MSMg01no391_p08.g1 PHD_FILE: MSMg01no391_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAAACGACTCACTATATGCCGCACCTCGCGCGGAATTCCGAGAN
ATTACATCCACTCACTTTACCCTATCCCACTTAAGTTACCCCCTCTCTCC
TTACTGATAGAAGCATATAATAAGTTTTATTTCCTATATAGATTGCATTT
TCGTGAATATTTCGGTTTTAATGTATGTATGTATGTATATATGTATGTAT
GCACCGCCTGTTTCCCCCCCCCCCTCCCCCCCCCCCCCACCCCACCTTTT
TTTTCCCCCAAAAGCCCCCCCCCCTCTCCTTTATTTTTCCCCCCCTATCT
ATCTTCCCCCCCCCCCCCCCCCTTCCCTGCATTCTCCCCCCCCCCCCCCC
CCCCCCCACCCAAAAGCTTTTTCTCCTTCTTTTCACCCCCCCCCCCGCGC
CTCCTTATTTTTTATTAATCAACTAACCCTCCCCCCCCCCCCCCCTCTTT
TCTCCCTTTTTTCTTCCCCCCCCCCCCTCTTCCTCTCCTCCCCCCCCCCC
CCCCCCCCCCCCCCTTTCTCCTCCTCCCCCCCTCCCCCTCTTCTCCCCCC
CCCCCCCCTCCTATCATTCCCCCTCATTCCCCCCCCCCCCTCTCTTTCAT
CCCCCCCCTTCCCCCCCCCCCCCCCACCTCCACTATCTCCCCCCCCCCCC
CCCCCCCCTCACTCCCCCCCCGCTCCCCCTTCCCCTATTCCCTCCCCCCC
ACCCCCTCTTCCTTCTTTCTTCTCCCACCCCCCCCCCCCCCCCTCCCCTT
CTTTTTTATTCCCTTCTCCCCCCCCCCCCCCTCACCACTCCTTTTTTTTA
TTTTCTATCCCCTCCCCCCCCCCCGCTCCTCCCCCATTTTTACCTCCCTC
CCCCCTCTATTTCTTCGTCTCTCCCCCCCCCCCCTCCTCCCTCTCTCCCC
TACCTCCTCCCCGCCC
NNCCCATGATAGTGGGAGGCCTGGCGGNCGCCTGTTTCCTCACCTGAGGN
NGAACNANAGAAGTAACAACCACCATCCAGGACAGCTAGTGCTACACACA
GAGAAACCTCATCTTGGAACCTCTCCCTCATCACCTTCCCCCAAAACAAA
CAAACAAACAAACAAAACAAAACATGAAATGAGAGAAATATATGTTGGAG
GTTGCCCAGGTTTAGGAAAAGGACATCAAAGGCAGATGTCATCAAAACAC
ATTTTTTATATTTAGAAAATGTTAAAGAATACATTTTTTTAAGAAAGAAG
AAAGTAGAATACTCAGCAATTCGTCATTAAGCATTTTATGAAATCTCACG
CAAGATGAAGGATATTTTGCGAACAAATGCATTTTGGGTAAAAAGGGGGG
TCATGGAGCTGTCTGCCCCCCCCAACACATTTTTCTTAGCATTTTGTTTA
ATGAAACTTGAATTTCATTTTTACCTTTATGCTTCCTGCTTACACTCTGC
GGGGCTATACATGAATTTTTACCTTTGCTACCTATCATGCCAGAGATACT
ATTTCACTGCGTATTTCGAAGATGCTCGCTTTCCCCAGCTTTTCTTTATT
ACTTACGCTGCAGCCAAACATCACCTGCAACTTTACCACCAAAACGCGCC
ACTTTTTTTTTTTCTTGTCCAACAACACCTTTTCCTAGCTACAATCAACT
TTTTACACACGAAAACTGGGACCCTCACTTCCCCTTATCCTCCCACAACC
CCCATATCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_p08.g1 MSMg01no391_p08.g1 CHROMAT_FILE:
MSMg01no391_p08.g1 PHD_FILE: MSMg01no391_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:20 2005
         (242 letters)



>mm_chr4_78217087_78217728
          Length = 642

 Score =  395 bits (204), Expect = e-114
 Identities = 228/240 (95%), Gaps = 7/240 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggacagctagtgctacacacagagaaacctcatcttggaacctctccctcatcaccttcc 60
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 522 ggacagctagtgctacacacggagaaacctcatcttggaacccctccctcatcaccttcc 463

                                                                       
Query: 61  cccaaaacaaacaaacaaacaaacaaaacaaaacatgaaatgagagaaatatatgttgga 120
           ||||||||||||||||||||||       |||||||||| ||||||||||||||||||||
Sbjct: 462 cccaaaacaaacaaacaaacaa-------aaaacatgaattgagagaaatatatgttgga 410

                                                                       
Query: 121 ggttgcccaggtttaggaaaaggacatcaaaggcagatgtcatcaaaacacattttttat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 409 ggttgcccaggtttaggaaaaggacatcaaaggcagatgtcatcaaaacacattatatat 350

                                                                       
Query: 181 atttagaaaatgttaaagaatacatttttttaagaaagaagaaagtagaatactcagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atttagaaaatgttaaagaatacatttttttaagaaagaagaaagtagaatactcagcaa 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)