Query= MSMg01no392_c10.b1 MSMg01no392_c10.b1 CHROMAT_FILE:
MSMg01no392_c10.b1 PHD_FILE: MSMg01no392_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:35 2005
(498 letters)
>mm_chr4_85430046_85430943
Length = 898
Score = 820 bits (424), Expect = 0.0
Identities = 468/498 (93%), Gaps = 24/498 (4%)
Strand = Plus / Plus
Query: 1 agataagcatgaatttctggcatcgagtctagggagagctttctccatggttaaatccat 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 agataagcatgaatttctggcatccagtctagggagagctttctccatggttaaatccat 260
Query: 61 taagtaaatcatggggattctgttgaagaatcacaaatgttatttgaaattggactacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtaaatcatggggattctgttgaagaatcacaaatgttatttgaaattggactacca 320
Query: 121 gaatttttcttgagtatacattttctaagtactgtgtttgctttatacagcttttccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gaatttttcttgagtatacattttctaagtactgtgtttgctttatacaacttttccaag 380
Query: 181 tgcatttcatagcaatctctttggtttaaccctacctccttttctttcaaatattcataa 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatttcataacaatctctttggtttaaccctacctccttttctttcaaatattcataa 440
Query: 241 atcctgtaacttgactgaaacaacctggtctcatcattagcgccattagatggcgctaaa 300
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 atcctgtaacaagactgaaacaacctggtctcatcattagtgccattagatggcgctaaa 500
Query: 301 tcattgccatttcagagtataggtttttgtttattttggtgcttttgaatggtttcaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcattgccatttcagagtataggtttttgtttattttggtgcttttgaatggtttcaaat 560
Query: 361 tcataggaatcctccctgcccctgccttttgagaactggaattaaaggcatgtgccatca 420
||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tcataggaatcctccct------------------------ttaaaggcatgtgccatca 596
Query: 421 tacccgtccaaaatacggagaacgcagtctaaaaaccttgatatcaatggatctcttttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tacccgtccaaaatacggagaacgcagtctaaaaaccttgatatcaatggatctcttttc 656
Query: 481 aaggcactcatggggacc 498
||||||||||||||||||
Sbjct: 657 aaggcactcatggggacc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_c10.g1 MSMg01no392_c10.g1 CHROMAT_FILE:
MSMg01no392_c10.g1 PHD_FILE: MSMg01no392_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:35 2005
(408 letters)
>mm_chr4_85566269_85567077
Length = 809
Score = 729 bits (377), Expect = 0.0
Identities = 398/405 (98%), Gaps = 1/405 (0%)
Strand = Plus / Minus
Query: 4 ttttttaaagg-acaactattttgtaaattaaaagttatgactgagtcattaaactggag 62
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 608 ttttttaaaggtacaactattttgtaaattaaaagttatgactgagtcattaagctggag 549
Query: 63 ataagaaaaggaaatctaagtcacagtaaggcaactcaaccagggttcactattcaagtc 122
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ataagaaaaagaaatctaagtcacagtaaggcaactcaaccagggttcactattcaagtc 489
Query: 123 ttgaacaaaggagacaagaaaagtagaatagtcttagttaagctttctatgaggtctact 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgaacaaaggagacaagaaaagtggaatagtcttagttaagctttctatgaggtctact 429
Query: 183 gtctgtttagccacagatggttgggaaacctgttgtccgaagcagtctctgtgattctat 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 428 gtctgtttagccacagatggttgggaaacctgttgtctgaagcagtctctgtgattctat 369
Query: 243 ttttaaagcagtagactatttcctgcgccctcttagtcctccttacgaatacacattacc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttttaaagcagtagactatttcctgcgccctcttagtcctccttacgaatacacattacc 309
Query: 303 aagtgtggcatttcatcatatttcccaagagtcttacaattaaacactggtgatttaaaa 362
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 308 aagtgtggcatttcatcatatttcccaagagtcttagaattaaacactggtgatttaaaa 249
Query: 363 tgtctcttattcatgcatttctcattgtgtcatagatatgactaa 407
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtctcttactcatgcatttctcattgtgtcatagatatgactaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space: 319200
Effective search space used: 319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
