BAC Information

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BAC

Clone NameMSMg01-392F08
Chromosome4 (Build37)
Map Location 51,571,697 - 51,572,209
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392F08.T7 (MSMg01no392_f08.b1)MSMg01-392F08.TJ (MSMg01no392_f08.g1)
ACCAG493892AG493893
length766707
length of high quality
(start - end)
512 (73 - 584)---
definitionCHROMAT_FILE: MSMg01no392_f08.b1 PHD_FILE: MSMg01no392_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:49 2005CHROMAT_FILE: MSMg01no392_f08.g1 PHD_FILE: MSMg01no392_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTCCACTCACATCCACTATTTGAAAATAATAGGCCCA
CATACACAAACAAGATTGATATTGTTTTACAGATTTATTCTGAAAGGACT
TTCCCCCCAAATTTAGTTTATTATATTTCAGTTAATCTCAAATATTTCTA
AGTTTGTTACAAATATTACTTCATAGTTTAGTCACATTTTTCTGCCTTGT
TATCATATGTTGCAATTATTGTGGCTTATTTTTTGTTTCCATCATATCTT
CAAGTAGCAATTTATTTATTTGTAGGTCAATGTGAGTCTCTTAAATATTT
CCATACTTCTTCTGATGTTTTATTTTTTACTATAGAGAAGGAAACATTAT
TTCTAGAACAATTTTAACTTTAAATTAAACTAAGTAGAAAGTATAGACTG
TTCCCATATTCCTCTACTTACCCCCATTATCCCTTTATCATTAATATATT
GCAATGTTGTGGTAATATATTGCCATGGCTCATTATAATTCATGAGTTAA
TAATGCTTATACTTTATTCATAAATATGTCCCATAGGATACATGGAGTTC
ACCATTTGTACGATGAGTTTTTATTTTTTTTCTCAAGAGCATGATGGATG
CATTATAATCTTACTGCCCCTAAGCCCTTGGATTGGATTTATCCGTCCCT
ATCCTAGNAATTGATTGGGCATTCTGCCCTTTTCAGATGGGCATGGAGGG
TCCCCTCTTACATTGN
CCCGGGGCCCCACCCCCNCCCCCTCCCCCCCTTCTCCNCNTTTTTTTTTC
CCCCCCCCAAAAATNCCAATCTTATAAAAACCCCCTTCCCCCCCCCCTCT
TCCCCCCCTCAAAAAAAACCTCNCCCCCCCCCCCCCCCTCCTTCCTCTCT
CTCCTTCTTCTTCCCCCCTNCCCTTCNNTTAATTCCCTCCCCCCCNTTNN
NTNNNNTNNNNNCCTGGGCCTCCGCAACATTTAAGGNTGGAACACTAATA
NNNAAAGGTATTTTCGCCGCNNAAAATTCAAATGGTTAATTCAANNNNAA
NNNAAAAGGGGGCCTTTNTTTTTTTTTATTTTTTTATAGGGAAAATTACC
GGGCAGTGCTTTGGGAATTTTAAAACTTTTTTGAAACACCGGGGGGGAAA
GGCGCAAAAAGAAAAAAACCACCTTAAACCTTTCCTTTAANAAAATCAAT
TTTCAAAATTTTTGGGGGCGCGTAAAGGGAAGGAAAAAACGGGGGTAAGG
GGCTTAGATCTTTAAGTANCNCATGCCCCTAACTGGGGTAAAAATATTTT
TTTGGGACCCCCCCCCCTACAGATTTCCTAAAATTAATTTTTAAAAAGGG
GCCCTCTGGGAATTTTTGGCCCCCTCAAATAACCTCCCCTTTTTTTGGCC
CATTTTTTGTTTAAAAACCCCCCCGAAAAAACAATCTCCGGTTACCGGGT
GCGCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_f08.b1 MSMg01no392_f08.b1 CHROMAT_FILE:
MSMg01no392_f08.b1 PHD_FILE: MSMg01no392_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:49 2005
         (512 letters)



>mm_chr4_51571497_51572409
          Length = 913

 Score =  930 bits (481), Expect = 0.0
 Identities = 505/513 (98%), Gaps = 1/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccactatttgaaaataataggcccacatacacaaacaagattgatattgttttacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccactatttgaaaataataggcccacatacacaaacaagattgatattgttttacag 260

                                                                       
Query: 61  atttattctgaaaggactttccccccaaatttagtttattatatttcagttaatctcaaa 120
           |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct: 261 atttattctgaaaggacttttccaccaaatttagttgattatatttcagttaatctcaaa 320

                                                                       
Query: 121 tatttctaagtttgttacaaatattacttcatagtttagtcacatttttctgccttgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tatttctaagtttgttacaaatattacttcatagtttagtcacatttttctgctttgtta 380

                                                                       
Query: 181 tcatatgttgcaattattgtggcttattttttgtttccatcatatcttcaagtagcaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tcatatgttgcaattattgtggcttattttttgtttccatcatattttcaagtagcaatt 440

                                                                       
Query: 241 tatttatttgtaggtcaatgtgagtctcttaaatatttccatacttcttctgatgtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttatttgtaggtcaatgtgagtctcttaaatatttccatacttcttctgatgtttta 500

                                                                       
Query: 301 tttttt-actatagagaaggaaacattatttctagaacaattttaactttaaattaaact 359
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttttactatagagaaagaaacattatttctagaacaattttaactttaaattaaact 560

                                                                       
Query: 360 aagtagaaagtatagactgttcccatattcctctacttacccccattatccctttatcat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtagaaagtatagactgttcccatattcctctacttacccccattatccctttatcat 620

                                                                       
Query: 420 taatatattgcaatgttgtggtaatatattgccatggctcattataattcatgagttaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatatattgcaatgttgtggtaatatattgccatggctcattataattcatgagttaat 680

                                            
Query: 480 aatgcttatactttattcataaatatgtcccat 512
           |||||||||||||||||| ||||||||||||||
Sbjct: 681 aatgcttatactttattcgtaaatatgtcccat 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)