Query= MSMg01no393_c14.b1 MSMg01no393_c14.b1 CHROMAT_FILE:
MSMg01no393_c14.b1 PHD_FILE: MSMg01no393_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:58 2005
(590 letters)
>mm_chr4_111097549_111098541
Length = 993
Score = 1081 bits (559), Expect = 0.0
Identities = 581/589 (98%), Gaps = 3/589 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaaatgagacttaaaaacacagaaacaatgtgggaagaaaaacaaataatctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaattccaaaatgagacttaaaaacacagaaacaatgtgggaagaaaaacaaataatctc 734
Query: 65 agacacacaaaacctttccctaaactcacctaggagccaaggtgtggagccaggatgcga 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agacatacaaaacctttccctaaactcacctaggagccaaggtgtggagccaggatgcga 674
Query: 125 tacagatcttctgtcccacaaggtaaattgcatcacctcccagtacgtgcacagaacacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tacagatcttctgtcccacaaggtaaattgcatcacctcccagtacgtgcacagaacacg 614
Query: 185 cagaaaccgtggtgactcagtggtgaatggttgagtgactgactgagtgatggtcctgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cagaaaccgtggtgactcagtggtgaatggttgagtgactgactgagtgatggtcctgat 554
Query: 245 aagggaatccctactccctggcctgagctgagaacaggaaatggccttcctcctgctt-c 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 553 aagggaatccctactccctggcctgagctgagaacaggaaatggccttcctcctgcttcc 494
Query: 304 cctggcagtctgtctgtaagagtctgcataaagcagcaatcattgccaaggacaacataa 363
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cccggcagtctgtctctaagagtctgcataaagcagcaatcattgccaaggacaacataa 434
Query: 364 agaggtgttagccagttcatgggccttggctaggttctctgaaaagtaggcagagcagtc 423
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 433 agaggtgttagccagttcatgggccttggcaaggttctctgaaaagtaggcagagcagtc 374
Query: 424 cacacagctctgaagtgacaggagttcacagaagagtcagaagcgactggtactatgaag 483
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cacacagctcggaagtgacaggagttcacagaagagtcagaagcgactggtactatgaag 314
Query: 484 cacatacacacatggagctgggccttagctgcctccatcactggccaaggacgagcctga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cacatacacacatggagctgggccttagctgcctccatcactggccaaggacgagcctga 254
Query: 544 cattc--ctgagagccaatcagcatctggctctgtcctgtttttcttta 590
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cattcctctgagagccaatcagcatctggctctgtcctgtttttcttta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 993
Length adjustment: 10
Effective length of query: 580
Effective length of database: 983
Effective search space: 570140
Effective search space used: 570140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_c14.g1 MSMg01no393_c14.g1 CHROMAT_FILE:
MSMg01no393_c14.g1 PHD_FILE: MSMg01no393_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:59 2005
(425 letters)
>mm_chr4_110949305_110950129
Length = 825
Score = 797 bits (412), Expect = 0.0
Identities = 415/416 (99%), Gaps = 1/416 (0%)
Strand = Plus / Plus
Query: 1 ctataattataactgtatgtattgagctcttttatagttggactgctattaggtcttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctataattataactgtatgtattgagctcttttatagttggactgctattaggtcttttc 260
Query: 61 tgatactgcgtaacagtagtaaaattatagttatgaagtagtaacaaaataattttataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatactgcgtaacagtagtaaaattatagttatgaagtagtaacaaaataattttataa 320
Query: 121 ttgggggtcaccacaacatgaggagctgtattaaagagtcataatatcaggaaggttaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggggtcaccacaacatgaggagctgtattaaagagtcataatatcaggaaggttaag 380
Query: 181 aaccactgttttaatcctcatgtatagcacagtgtttatcaatgattaagaaatcatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccactgttttaatcctcatgtatagcacagtgtttatcaatgattaagaaatcatcaa 440
Query: 241 tagttatcaaataaaacaagaaatgtgagggcaaaattttatttaaagatgtttgaaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagttatcaaataaaacaagaaatgtgagggcaaaattttatttaaagatgtttgaaagc 500
Query: 301 aaaataaggtttctgtggtcagctccaggctctgcttttaaatgggtctcataaagctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaataaggtttctgtggtcagctccaggctctgcttttaaatgggtctcataaagctaa 560
Query: 361 tttttaaaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg 416
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tttttaaaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag-aagg 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space: 339456
Effective search space used: 339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
