Query= MSMg01no393_h12.b1 MSMg01no393_h12.b1 CHROMAT_FILE:
MSMg01no393_h12.b1 PHD_FILE: MSMg01no393_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:25 2005
(508 letters)
>mm_chr4_18819119_18820026
Length = 908
Score = 930 bits (481), Expect = 0.0
Identities = 501/514 (97%), Gaps = 10/514 (1%)
Strand = Plus / Minus
Query: 5 gaattcatctggcagacacatctctgagcctgcctttgaaggatcatctttactagattg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcatctggcagacacatctctgagcctgcctttgaaggatcatctttactagattg 799
Query: 65 aggtggaaaggcactctcatggtaactggccccattatttctgatggaacctgaaataaa 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aggtagaaaggcactctcatggtaactggccccattatttctgatggaacctgaaataaa 739
Query: 125 caggagaaaaatgagctgagcacatgaatacaactctcctttgattcccagttgtaaatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caggagaaaaatgagctgagcacatgaatacaactctcctttgattcccagttgtaaatc 679
Query: 185 tagtgtgaccagggtgcctcaagcttctgcaacactgacagtaatttcactatgggttct 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagtgtgaccagggtgtctcaagcttctgcaacactgacagtaatttcactatgggttct 619
Query: 245 actacattgaacttaattttccattttcagaatttttttccaacaacagaaaagtaacta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 actacattgaacttaattttccattttcagaatttttttccaacaacagaaaagtaacta 559
Query: 305 aggcaggagtctatacttgatcacatacatgttaaatgctttggaagagtgtcaagttac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggcaggagtctatacttgatcacatacatgttaaatgctttggaagagtgtcaagttac 499
Query: 365 taacacaaagtttgatgagatgttagagatgggaagttttctcctgggagaggaggaagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taacacaaagtttgatgagatgttagagatgggaagttttctcctgggagaggaggaagc 439
Query: 425 tgaaatgaagtctaa----------ggaaaagtagtaactgtctttggtacaagaacaga 474
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaaatgaagtctaatgaagtctaaggaaaagtagtaactgtctttggtacaagaacaga 379
Query: 475 aggagttaanatattattataaaacttaatgatt 508
||||||||| ||||||||||||||||||||||||
Sbjct: 378 aggagttaaaatattattataaaacttaatgatt 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_h12.g1 MSMg01no393_h12.g1 CHROMAT_FILE:
MSMg01no393_h12.g1 PHD_FILE: MSMg01no393_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:25 2005
(533 letters)
>mm_chr4_18669162_18670094
Length = 933
Score = 797 bits (412), Expect = 0.0
Identities = 505/538 (93%), Gaps = 9/538 (1%)
Strand = Plus / Plus
Query: 1 tttgtttagctctttatcccgtttttaaaatagggttatttgtttttctggaatccaact 60
||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct: 200 tttgttttgctctttatcccattttt-aaatagggttatttggttttctggaatccaact 258
Query: 61 tcttgagttctttatatatattggatattagccccctatcagatttaggataggtaaaga 120
||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 259 tcttgagttctttatatatattggatactagtcccctatcagatttaggattggtaaaga 318
Query: 121 tcttttcccaatctgttggttaccatttttccttattgacagtgtcctttgccttacaga 180
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 319 tcttttcccaatttattggttactgtttttccttattgacagtgtcctttgccttac--a 376
Query: 181 a---gctttgcaactttatgagatcttatgtgttgact-ctcgatcttacagcacaagcc 236
| ||||||||| ||||||||||| ||||||| || | || ||||||||||||||||||
Sbjct: 377 atttgctttgcaattttatgagatcctatgtgtcga-tacttgatcttacagcacaagcc 435
Query: 237 attggtgttctgttcaggaa-ttttccccctgttcccagattatcgaggcttttccccac 295
||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 436 gttggtgttctgttcaggaatttttccccctgtgcccagattatcaaggcttttccccac 495
Query: 296 tttctcctctataactttcagtgtttctggttttatatggcgttccttgatccacttaga 355
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 496 tttctcctctataactttcagtgtttctggttttaaatggcattccttgatccacttaga 555
Query: 356 cttgagctttgtacactattaagctttttaaagattgtttaattgaaatgtttattaaac 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttgagctttgtacactattaaactttttaaagattgtttaattgaaatgtttattaaac 615
Query: 416 atgtaaaactttcctaccagtaaaatagacaggtaaactatttaatgaaaatatattggc 475
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 616 atgtaaaactttcctaccagtaaaatagacgggtaaactatttaacgaaaatatattggc 675
Query: 476 aatatttatcactcacaaacataactcttgcacatccacaaattttttcaacaaaaat 533
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 676 aacatttatcactcacaaacataactcttgcacatccacaaattttctcaacaaaaat 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
