TCCCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGAGGAT
CCGCGGAATTCAAGGTCTTCCTGTGCAGCTCATTGAGGCCCTGTCTCAAC
ATTAAAATTTTAAAAAGGCACTGGCGACTCATTTTAGTGGTAGAGTAGTT
GCCTGAGGCCCAAGGACCAATCCAGTACTGAGGTGACAGAAAATGATAGT
AAAAATGATCAATTGCAACAATATGCTTTAATAACACCTAAAATCTTTGA
AGCTATCCTTCTCTAGCAATTATACAAATATACTTTCATAAACCTTGCAA
TCTTTGAAGTTACCTATCTCTTTTAAAACATTTTATTAATTTTATGTGTG
CGAGTGTTTTGCCTGTATGTATGTCTGCGCTCCACATATGTATCATCCAT
AGAGGCCAGAAGAGTGCTTCCCATCCCCTGGAACTGGAGTTATGGATGTT
TATAAGTTTGCCCGTGTCCCTATGCTCTTAATCCCGTATCCTCCTTTCCC
GTTCCCTTTCCTTTCTTTTGATCATGTAATCTTTCCAATGCTCGGATTTG
TATTTCATCCCCTCTTTTTCCCCGCCCTTTCCCTCTTTTTGCCCTGCTCC
CTTCCTCNTCTTCCTCACCTCTTTTTCTCCCTCTTCCTTTATCTCTCGCT
TCACAACCATTTCCCTTCCCCTTTTTTCCTTTCTTTTTTTTCCCACCCCT
TTCTTTTCTTCTTTCCCCACTTCTTTTTTCCTCCCACCTCTCTTTCCCCC
CCTTTTTCACACTCTTCTTTTTACTC

TTTTTCTCAATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCTAGCCTTGTCTCA
GAGTGAGTTCCATTGTTAGCTAGTATGTGGGATTATCATAGATAAGAAAG
GAGATCGGGGATCCTTGCTCATCCCTGGGACTCTGCAGCCAGTCCATCAT
AACAGAGGTGGCCAATAGCAGGCCAGATGCAAGCCACAATTGAGTTGTTA
AGAGCCCGAGGGAATTACTTCCCTTGTAGGGAATGAGTGACTTCCGCATA
TCGGCAGGACCCAGGACTGGAGTAAAGCCCGTTTCTTTGTATGCGTCTGC
GTGGTGTTCTTTATTATATCACCGCTTTTCTCCCTGACTCTCCTGTGGCT
TCTCTTCCTCTCTCTGTTCTCTTCTCCCCGCCCCTGTTTCCCCCCCCCCC
TATTTTCTCTTTCTTTTTTCCCCTCTCCCTTCCCGCCTCTCCCTTGTCTT
TTTTCTTTTCCACCCCCCCTTTCCCTCCTTCTCTCTTCGCTTCCTCTTTC
TCTTTTCCTTCCTTTCCTTTTCCCTTTTCCCTTTCTCTTTTCTCCCTTTT
TTTCTTTCCCGCCCCCGCCTCTCCTCTCTATTCGCTCATCTTCTCTGCCT
TTTTTCTTCCTTTTCCCCTTTCCTTTTTTTCTTTTCTCTTCTTCCTTTCT
TTTCTTTCCCCTCCCCTCCTCCCTTTTTTCCTTCCTCCCCTTTATTCCTT
TCTCTTTTCCTTCTCCCCTCCCGCCCTTTTTGTTTTTTAATTTCTCTTCC
TACTACCCCTTTATCCTATCCGCCTTTCTCCTTTCCTCTTCCTCTTCCCT
TTTTCTCC

Query= MSMg01no394_b08.b1 MSMg01no394_b08.b1 CHROMAT_FILE:
MSMg01no394_b08.b1 PHD_FILE: MSMg01no394_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:20 2005
         (319 letters)



>mm_chr4_106437751_106438466
          Length = 716

 Score =  503 bits (260), Expect = e-147
 Identities = 304/320 (95%), Gaps = 5/320 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaaggtcttcctgtgcagctcattgaggccctgtctcaacattaaaattttaaaaagg 60
           |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 468 ttcaaggtcaacctgtgcagctcattgaggccctgtctcaacattaacattttaaaaagg 409

                                                                       
Query: 61  cactggcgactcattttagtggtagagtagttgcctgaggcccaaggaccaatccagtac 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 408 cactggcgactcattttagtggtagagcagttgcctgaggcccaaggaccaatccagtac 349

                                                                       
Query: 121 tgaggtgacagaaaatgatagtaaaaatgatcaattgcaacaatatgctttaataa-cac 179
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 348 tgaggtgacagaaaatgatagtaaaaatgatcaattgtaacaatatgctttaataaacac 289

                                                                       
Query: 180 ctaaaatctttgaagctatccttctctagcaattatacaaatatactttcataaaccttg 239
            |||||||||||||||||||||   |||||||||||| |||||||||||||||||| |||
Sbjct: 288 -taaaatctttgaagctatcct---ctagcaattataaaaatatactttcataaacattg 233

                                                                       
Query: 240 caatctttgaagttacctatctcttttaaaacattttattaattttatgtgtgcgagtgt 299
           |||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||
Sbjct: 232 caatctttgaagttacctgtctcttttaaaacgttttattaactttatgtgtgtgagtgt 173

                               
Query: 300 tttgcctgtatgtatgtctg 319
           ||||||||||||||||||||
Sbjct: 172 tttgcctgtatgtatgtctg 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 716
Length adjustment: 9
Effective length of query: 310
Effective length of database: 707
Effective search space:   219170
Effective search space used:   219170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_b08.g1 MSMg01no394_b08.g1 CHROMAT_FILE:
MSMg01no394_b08.g1 PHD_FILE: MSMg01no394_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:20 2005
         (108 letters)



>mm_chr4_106255759_106256266
          Length = 508

 Score =  209 bits (108), Expect = 4e-59
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggctagccttgtctcagagtgagttccattgttagctagtatgtgggattatcataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggctagccttgtctcagagtgagttccattgttagctagtatgtgggattatcataga 260

                                                           
Query: 61  taagaaaggagatcggggatccttgctcatccctgggactctgcagcc 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagaaaggagatcggggatccttgctcatccctgggactctgcagcc 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)