BAC Information

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BAC

Clone NameMSMg01-394C09
Chromosome4 (Build37)
Map Location 28,649,767 - 28,650,230
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneEpha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394C09.T7 (MSMg01no394_c09.b1)MSMg01-394C09.TJ (MSMg01no394_c09.g1)
ACCAG495273AG495274
length7721,233
length of high quality
(start - end)		468 (56 - 523)---
definitionCHROMAT_FILE: MSMg01no394_c09.b1 PHD_FILE: MSMg01no394_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:25 2005CHROMAT_FILE: MSMg01no394_c09.g1 PHD_FILE: MSMg01no394_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTAGTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTACCATGCCTATGCCCACATGTTCTCAGGGCATA
CCCCAATGATCTAATTTAAGAACATCCTGTCTTCTCTTCCTAGTAATGAT
CCCACTACCATCTAGCAGTGTTATTTGAGGATTCTGGCACCTAACAGAAG
TACTACTGCAACACACAGTAAACCACATTTGTGTCCTAGCAGTTATTTAC
ATTTCAATGTGTTTGCTGCTTCCAAATACAGTATAGACAGTCTCAGTCGC
CCTCTCCTTTGGATTAACTGCTGGATTAATAGACATACAGGGGAGATTCC
AGAGGTAAAGGCATGTAACACCAGCAAATAATTAGGAGACTGAGGCAGGT
AGTTTGATATTTCAAGGCCAGCCTGTGTCACAAAGAAAGTTTAAGCCCAG
CATGGGTAATGTAGTGAGAATTAATCTCAAAATAAATAGTGCACAAGGGT
GTTGGCCTGACAGGTAAACTGCTTGCCTACCCTACCCTAAGCTCTAGATT
TAACTCACAAGGCCTAAGTGGGGCAAAAAGGGCTCAGAGAAATCTCCTGT
TATTACCATGGCCCAAGGCATCTTGAAGAAACTTTACATTATATTAACTC
TGGATAACTGGAGCACTTCTTGTTCCCCCAAGGAATACTAATGTGTTAAT
TGTAGTTGAAATTTGTTCCCTCCTTTCCTCCCCAAAAATTACGGTAAAGT
TTGGTCCCTTCAAACCAAATTC

CCTATATAAATATTAACATATGATTAATAGATGACTGGGGGCGAGGTTGT
TGCATCCAACAAGCTGGCGCAGCGGCGGTGCGGGGGGGTTTTGCGTGCGG
GGGGGGCCTCGCTGTGCCGTGCTGCAAAACAAACACGATGTAGACTAGTC
GGAGAATAGTAGTACGACTGTATCACCTGTGCAATGAACAGTCCAATACT
ATATTGTGGTGTGACGAACACTTCGTNAGCACAAAGAGAGAGAGCGGTAT
GTGGAGTGTGGTGCTATAGATAAAGATTAAACACATCCCTTTTGTATAAT
GTGTGTCGACTGAATGCTAAACTGTATTGTGTCAGTAGATAGAATTGGCC
TGACGCATAATGAACGGTTCCTATAATTACTACGTATGTTGTACCGCACG
TCGGGCATCGACTCATAGTCGCGGCGTATCTGCTTGCTCCGTGGCGGCGT
GCGCGCGGCGTCGCTATTTTTGAGACCTGTCAGCGCGTCTTTTTCACCAC
ANCCCCATCATCGTTTATATCGTTATCCCTTCCCCAACCCCCCCCAATTT
ACAAAATTTAAACCGGCCCAGCATAGTACCGCGAAATTAACCTATCCCGC
TTATCCCGCCGCCTTCTAGCATCCTAGCCCCTATATCCCCCGATTCCCCC
ACCACTAAGCGGAGTAAATCCTATTCTATGCCATTGGATCGTTTCGCCCC
CATCGACGTTATAATAGCGACCGTGGCAAAACAGCTGTAGAGCGCGTAAT
CCTTACTTTTATCAGTATCTATGATTACGAAATTACCCCAATACGCATCG
TACACCGACCGATACGATTACTAATCCATCCCTAACGCTACTGCCATTAT
CCTTTATCACCGCGCCGCTTCTGCTACGCCCTCCTAGATACATATATCAC
TGGACTGTTATGTTTTACGGATCGCGCGGCGCATTAGCCTGATGCCATAC
ACGTGTTGTCGCGCGATTCGCCCTACGCATCCAATACGCGCTCACTATAT
TGCATCCCCTCTACCGTCCCTTACACTCTATATCACGCACACACATTATA
ATCCCCGCCCCACTAACGGCCGCTTATGCAATCTTCGTATCGTCGACATG
TCTACGACGGCCTCGTACATTTAACACATTTATTCAACAGAATATGCGCT
CGCCAGTTATATGCTTCTATCGGCGTCAGTCGCTGTTTAGCGAGATCGAC
TCAGCGAGTTATGCATATTATATCAAACAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_c09.b1 MSMg01no394_c09.b1 CHROMAT_FILE:
MSMg01no394_c09.b1 PHD_FILE: MSMg01no394_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:25 2005
         (468 letters)



>mm_chr4_28649726_28650593
          Length = 868

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaccatgcctatgcccacatgttctcagggcataccccaatgatctaatttaa 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaattcctaccatgcctatgctcacatgttctcagggcataccccaatgatctaatttaa 446

                                                                       
Query: 65  gaacatcctgtcttctcttcctagtaatgatcccactaccatctagcagtgttatttgag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaacatcctgtcttctcttcctagtaatgatcccactaccatctagcagtgttatttgag 386

                                                                       
Query: 125 gattctggcacctaacagaagtactactgcaacacacagtaaaccacatttgtgtcctag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattctggcacctaacagaagtactactgcaacacacagtaaaccacatttgtgtcctag 326

                                                                       
Query: 185 cagttatttacatttcaatgtgtttgctgcttccaaatacagtatagacagtctcagtcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagttatttacatttcaatgtgtttgctgcttccaaatacagtatagacagtctcagtcg 266

                                                                       
Query: 245 ccctctcctttggattaactgctggattaatagacatacaggggagattccagaggtaaa 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ccctctcctttggattaactgctggatgaatagacatacaggggagattccagaggtaaa 206

                                                                       
Query: 305 ggcatgtaacaccagcaaataattaggagactgaggcaggtagtttgatatttcaaggcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggcatgtaacaccagcaaataattaggagactgaggcaggtagtttgatatttcaaggcc 146

                                                                       
Query: 365 agcctgtgtcacaaagaaagtttaagcccagcatgggtaatgtagtgagaattaatctca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agcctgtgtcacaaagaaagtttaagcccagcatgggtaatgtagtgagaattaatctca 86

                                                       
Query: 425 aaataaatagtgcacaagggtgttggcctgacaggtaaactgct 468
           |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 85  aaataaatagtgcaaaagggtgttgggctgacaggtaaactgct 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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