Query= MSMg01no394_g12.b1 MSMg01no394_g12.b1 CHROMAT_FILE:
MSMg01no394_g12.b1 PHD_FILE: MSMg01no394_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:47 2005
(406 letters)
>mm_chr4_81738608_81739412
Length = 805
Score = 770 bits (398), Expect = 0.0
Identities = 404/406 (99%), Gaps = 1/406 (0%)
Strand = Plus / Minus
Query: 1 tcaaaaacataaggggaaagcaacaagacacatgcaatgtttcttggcagatgtgccccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tcaaaaacataaggggaaagcaacaagacacatgcaatgtttcttggcagatgtgccccc 546
Query: 61 atttctcctcacagaacccatatgaagacagtgttctctttaagagtgtgcaagtgtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 atttctcctcacagaacccatatgaagacagtgttctctttaagagtgtgcaagtgtctt 486
Query: 121 ggtgactgcagagggtttgccctcatgctagtgttgtcaaaggtcttggtcttttccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggtgactgcagagggtttgccctcatgctagtgttgtcaaaggtcttggtcttttccctt 426
Query: 181 ttcaagtctatccgataaatcttcccctttctttctcttacttcctcccaaatcctcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcaagtctatccgataaatcttcccctttctttctcttacttcctcccaaatcctcagt 366
Query: 241 gacagggactatctgcagtcccttcctccccctctagcactcagtgtggaaggctgttgc 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gacagggac-agctgcagtcccttcctccccctctagcactcagtgtggaaggctgttgc 307
Query: 301 cattggagacctccccagctcccacaagctctttctgtccaagaacctaggtggtggact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cattggagacctccccagctcccacaagctctttctgtccaagaacctaggtggtggact 247
Query: 361 taaagtagtagaaaacagtcaataattaggaaaacagatttttcag 406
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taaagtagtagaaaacagtcaataattaggaaaacagatttttcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space: 316012
Effective search space used: 316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_g12.g1 MSMg01no394_g12.g1 CHROMAT_FILE:
MSMg01no394_g12.g1 PHD_FILE: MSMg01no394_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:47 2005
(248 letters)
>mm_chr4_81575625_81576272
Length = 648
Score = 333 bits (172), Expect = 7e-96
Identities = 216/246 (87%), Gaps = 24/246 (9%)
Strand = Plus / Plus
Query: 1 attcagaaactgcttatgtaaccaaccagggacttcttaaaagaacctgctctataaaaa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 225 attcagaaactgcttatgtaaccaatcagggacttcttaaaagaacctgctctataaaaa 284
Query: 61 tatctcaatattaaatgttagatctgaatgaatgaatgaatgaatgaatgaatgaatgaa 120
||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tatctcaatattaaatgttagatctgaatgaatgaatgaa-------------------- 324
Query: 121 tgaagcaattgcctacctctggggggaaaaaggaggggaagctctaattgaacaccctca 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 ----gcaattgcctacctctgggggaaaaaaggaggggaagctctaattgaacaccctca 380
Query: 181 aacctacaaccctggcctgtgcctgatccaaagggctgcctctcagaaaaatccacattt 240
| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccaacaaccctgccccgtgcctgatccaaagggctgcctctcagaaaaatccacattt 440
Query: 241 aaagtg 246
||||||
Sbjct: 441 aaagtg 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
