BAC Information

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BAC

Clone NameMSMg01-394G20
Chromosome4 (Build37)
Map Location 46,505,340 - 46,505,715
singlet/doubletsinglet
Overlap geneNans
Upstream geneShb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b
Downstream geneTrim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394G20.T7 (MSMg01no394_g20.b1)MSMg01-394G20.TJ (MSMg01no394_g20.g1)
ACCAG495486AG495487
length795809
length of high quality
(start - end)		456 (48 - 503)381 (79 - 459)
definitionCHROMAT_FILE: MSMg01no394_g20.b1 PHD_FILE: MSMg01no394_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:48 2005CHROMAT_FILE: MSMg01no394_g20.g1 PHD_FILE: MSMg01no394_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGATGGTGCTTGTGCTCCCCATACGTCTTCCCCCATGAATGC
TTCGAAGTATATGGTCTCTCCAGGGCCTTCCGGTTAAACTTGAACTCCAA
CTCGCTCTTCTGAAACTTAGCGCAGTCGGCCCCACACTCCTGTAAAAAAA
GAAATTAAAAGTTAAAAAATAAGTACACAGTTCTCACTAAATAGCCTTGG
CTGGCCTGGAACTTGCTATGTAGACCAGTGATCTTCCTGCCTCTGCTTCC
TTAGTGCTAGGATTAAAGACATGAACCAAATATTTCTAATGTAAGAAAAA
AAAAAGAGAAAGACAAGACTCAGAAAGCAGAGGCAGGTGGATCTCTGTAT
ACTATCTCAGCCTTCTTATATACTAAGCCCCAGAACAGCCAGGCTGTACA
TACAGACTGTCTCACGAGAACCTAAAGAGAAAAAGAGAAAAGAAAAGCAC
TCCCTCTACCACCATGTGGGTCCCAGGGATTGCAGGTGTGTGCAGATGTA
CACCGTGTCATGTGGTTGAAGACCACCTGTGATGCCATCGCTAAGAGATC
CGGGTCCCTACACTCTTGGGGATAACTCCCCACACAGTATATATCGCTTA
AGTACTTGGGTGGATTCCCTATACCCTAAACCTTACCACACTCCTTTCCT
TTAACCAACTAACCCCCCATTCCTTTTTCTCCGAGCACCCCTAATGGGGT
CCCCGTGCCCGCCCTCCTCTATTCCTACACCCCTCAATGGGGTTG

TTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCCTCAAACTTGTGAGGAA
CACGTTTCTGTTGTTCGTAAGTCACCCGGCTATGGCGTCTTTTTATAGCT
ATTTCCTACTGTCCAACTGTCCTGTTAGTTGCCTGCCCTTCACTGTAGCC
ACGTGGCACTTACTGGTGTGTGTGTGTTACATGTACTTATGTAGTATGTA
TGTATGTATGCATGCATGCATGCATGCATGTACCAGGCAGCATGTGTGAA
CTTCAGAGAACAACTTGGTAGAGTCACTTCTGTCCTTCCTCCTTTAGATA
GATTTTGGGATCAGACTCGGGTCACTAGGCCTGCACAGGAAGCCCCTTTA
CCCACCAGGCCACCTTGCCAGTCCCGTGTGCGAGGATCCACTTGTCTCTA
AATCTCAACCCAGACACTTCTTGTACATAGATTTTCCTTGACTTCCTCTA
TCCCTAACTACCTAGGCATCGTTCCTATTTGCTTGCAAAATAACAAAGCT
TCGGCCTCCTATGCAGAATCCTTTTGAACAACCTCTTTGGCCTTATACTT
TCACTTACCATTTTTTCATTCCCATTCCCGTCGCCTATCATTCATTTTCC
CCTAATCACACCCCCCTCCACTTTCCCCCCCCTCTTTATTTCTTCCTCCT
TACTCCATCATTCTATTTTTTCTTATTTCTCCATATCACTCCTTACCCTT
TCTTAACACTTCACACCCCTTCCCCACATTATTTCTCCTATCTCCCACCC
TTTATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_g20.b1 MSMg01no394_g20.b1 CHROMAT_FILE:
MSMg01no394_g20.b1 PHD_FILE: MSMg01no394_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:48 2005
         (456 letters)



>mm_chr4_46505332_46506187
          Length = 856

 Score =  661 bits (342), Expect = 0.0
 Identities = 366/376 (97%), Gaps = 4/376 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagatggtgcttgtgctccccatacgtcttcccccatgaatgcttcgaagtata 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaattccagatgccgcttgtgctccccatacgtcttcccccatgaatgcttcgaagtata 325

                                                                       
Query: 65  tggtctctccagggccttccggttaaacttgaactccaactcgctcttctgaaacttagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggtctctccagggccttccggttaaacttgaactccaactcgctcttctgaaacttagc 265

                                                                       
Query: 125 gcagtcggccccacactcctgtaaaaaaagaaattaaaagttaaaaaataagtacacagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcagtcggccccacactcctgtaaaaaaagaaattaaaagttaaaaaataagtacacagt 205

                                                                       
Query: 185 tctcactaaatagccttggctggcctggaacttgctatgtagaccagtgatcttcctgcc 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tctcactaactagccttggctggcctggaacttgctatgtagaccagtgatcttcctgcc 145

                                                                       
Query: 245 tctgcttccttagtgctaggattaaagacatgaaccaaatatttctaatgtaagaaaaaa 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 144 tctgcttccttagtgctaggattaaagacatgaaccaaatatttcttatgtaagaaaaaa 85

                                                                       
Query: 305 aaaa----gagaaagacaagactcagaaagcagaggcaggtggatctctgtatactatct 360
           ||||    |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 84  aaaaaaaagagaaagacaagactcagaaggcagaggcaggtggatctctgtatactatct 25

                           
Query: 361 cagccttcttatatac 376
           |||||| |||||||||
Sbjct: 24  cagcctacttatatac 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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