BAC Information

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BAC

Clone NameMSMg01-395D04
Chromosome4 (Build37)
Map Location 132,550,778 - 132,732,813
singlet/doubletdoublet
Overlap geneFgr, Ahdc1, LOC100041932, Wasf2
Upstream geneEpb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163
Downstream geneGpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395D04.T7 (MSMg01no395_d04.b1)MSMg01-395D04.TJ (MSMg01no395_d04.g1)
ACCAG496073AG496074
length752762
length of high quality
(start - end)
369 (53 - 421)429 (84 - 512)
definitionCHROMAT_FILE: MSMg01no395_d04.b1 PHD_FILE: MSMg01no395_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:58 2005CHROMAT_FILE: MSMg01no395_d04.g1 PHD_FILE: MSMg01no395_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,732,449 - 132,732,813)(132,550,778 - 132,551,070)
sequence
NCCGGCCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCTCTGTCACTGCGTCTGCAGTTTCTGCTGCAGCCCT
TCCTGCCATCCGTCCTGCAGATTCCTTTTGAAGCTAGAGGGTGGTGGTAG
ATGAAGAGAGGGTAGAAGGGAAGAAGAGGCACCAAAAAAGGAGCCCTTCT
CGGAGCAGGGAACAGGGGATATATTTTTGCATTACCTAGGGAAAGCAGAT
GGGGGAGAAATAGGAACATGGAGGAGAGGGAAACTAAATAAAGAGCACCA
ACGACCCCTGAGGGCAAAGCACAGGCTCTCCCAGGCACTCACTCAGGCTG
CCCAGCTGTCGGATGACATTTGCCAGGGTGATGTTGGTCCTGCATTCCAG
CTCGCTTGTATCGCTAGGCAACGTCTGATGGCACAGGTGCCTTGGCTCGA
TGTTCCTGGCTACCACCGGCATAGTGGACCTGCTTCCGGCGAGGTTCTCT
TTGATGACTACCACCCACATGGGAATGACCCCGCCTATATTACTTTCCCA
CATATCTCCTTCCTCCTCCCCTACGCCAGTCCCCCCTCTTTTCCCTTGCG
CTGTTGCCCCTTTCTCATCCCCCGCCTTCCTATTCTTCTCCCCCCCGCCC
CCATCTTCCCTGTTCTATATTCACTTCTTCCCCCGTCCCCCCTTTTGCGT
CTTTCTTTTTCTCTCCCATTGTTTTCCCCTTTCTCTTTATTCTTAACCCT
CN
NTTCTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCGGGGGCCTCCTCC
TGCTCTGAGGGAGACGAGGACTAAAGGACCCTTTCCACGCAGGGGCCTAC
TCCCTGTCCATCCGTGACTGGGACCAGAACAGAGGCGATCACATAAAGCA
TTATAAGATCCGAAAGCTGGACACGGGCGGCTACTACATCACCACACGGG
CCCAGTTTGACTCCATACAGGACCTGGTGCGGCACTACATGGGTGAGCTG
CTAAGTGTGACTGACCGTGTTGTCATGACGGGGAGACTGAGGCCTGGAGA
ACAAAAATCTCCTAAAGAAGTAGTGGCTGGCTAGGCGTGGTGGCACACGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGA
GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGA
GAAACCCTGTCTCGAATAACCCTNCTTAAAACTTCAAACATCTCAATTCA
TTGAACAAGTAGTGGCCTGGCCCACGTATGTTGCGTCCTTAGGCCGGGGA
TTCTGCTTCTGTGGGGTACCCTCGACCACACTGAGTACCATCCCATGCCC
TCCTAATTTTCGTTTCCCTGTCCCAAGCCTTGGGGGAACTTTTGGGATAA
CTCAATTTTCTTTCGGGCGGGGGGGGTTTCCCACATTTTGGTCCCCCCCC
CCATTTCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_d04.b1 MSMg01no395_d04.b1 CHROMAT_FILE:
MSMg01no395_d04.b1 PHD_FILE: MSMg01no395_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:58 2005
         (369 letters)



>mm_chr4_132732245_132733013
          Length = 769

 Score =  706 bits (365), Expect = 0.0
 Identities = 365/365 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgctctgtcactgcgtctgcagtttctgctgcagcccttcctgccatccgtcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctgctctgtcactgcgtctgcagtttctgctgcagcccttcctgccatccgtcct 510

                                                                       
Query: 65  gcagattccttttgaagctagagggtggtggtagatgaagagagggtagaagggaagaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gcagattccttttgaagctagagggtggtggtagatgaagagagggtagaagggaagaag 450

                                                                       
Query: 125 aggcaccaaaaaaggagcccttctcggagcagggaacaggggatatatttttgcattacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aggcaccaaaaaaggagcccttctcggagcagggaacaggggatatatttttgcattacc 390

                                                                       
Query: 185 tagggaaagcagatgggggagaaataggaacatggaggagagggaaactaaataaagagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagggaaagcagatgggggagaaataggaacatggaggagagggaaactaaataaagagc 330

                                                                       
Query: 245 accaacgacccctgagggcaaagcacaggctctcccaggcactcactcaggctgcccagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 accaacgacccctgagggcaaagcacaggctctcccaggcactcactcaggctgcccagc 270

                                                                       
Query: 305 tgtcggatgacatttgccagggtgatgttggtcctgcattccagctcgcttgtatcgcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtcggatgacatttgccagggtgatgttggtcctgcattccagctcgcttgtatcgcta 210

                
Query: 365 ggcaa 369
           |||||
Sbjct: 209 ggcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no395_d04.g1 MSMg01no395_d04.g1 CHROMAT_FILE:
MSMg01no395_d04.g1 PHD_FILE: MSMg01no395_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:58 2005
         (429 letters)



>mm_chr4_132550574_132551402
          Length = 829

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gggggcctcctcctgctctgagggagacgaggactaaaggaccctttccacgcaggggcc 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 205 gggggcctcctcctgctctgagggagacgagaactaaaggaccctttccacccaggggcc 264

                                                                       
Query: 65  tactccctgtccatccgtgactgggaccagaacagaggcgatcacataaagcattataag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactccctgtccatccgtgactgggaccagaacagaggcgatcacataaagcattataag 324

                                                                       
Query: 125 atccgaaagctggacacgggcggctactacatcaccacacgggcccagtttgactccata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atccgaaagctggacacgggcggctactacatcaccacacgggcccagtttgactccata 384

                                                                       
Query: 185 caggacctggtgcggcactacatgggtgagctgctaagtgtgactgaccgtgttgtcatg 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggacctagtgcggcactacatgggtgagctgctaagtgtgactgaccgtgttgtcatg 444

                                                                
Query: 245 acggggagactgaggcctggagaacaaaaatctcctaaagaagtagtggctgg 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acggggagactgaggcctggagaacaaaaatctcctaaagaagtagtggctgg 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)