Query= MSMg01no395_l19.b1 MSMg01no395_l19.b1 CHROMAT_FILE:
MSMg01no395_l19.b1 PHD_FILE: MSMg01no395_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:40 2005
(512 letters)
>mm_chr4_114291502_114292413
Length = 912
Score = 741 bits (383), Expect = 0.0
Identities = 478/511 (93%), Gaps = 8/511 (1%)
Strand = Plus / Minus
Query: 6 gaattccatgttgtc--tccccctgtgccacagagaccctgttaccctcttctctgtcct 63
||||||||||||| | | || ||||||||||||||||||||| |||||||||||||||
Sbjct: 712 gaattccatgttgacagt--ccttgtgccacagagaccctgttatcctcttctctgtcct 655
Query: 64 tcagactgcagtggtccagtctccttatcccacccccccttaggttcaattcttcctgct 123
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 654 tcagactgcagaggtccagtctccttatcgcaccctcccttaggttcaattcttcctgct 595
Query: 124 ttcccaattcagggcctttccatggtttcttccctgcaccc-cccaccccagcactcttt 182
|||||||| |||||||||| ||||||| |||||| | ||| ||| |||| |||||||||
Sbjct: 594 ttcccaatccagggcctttgcatggttccttcccccctccctccc-ccccggcactcttt 536
Query: 183 cttaatgcccttccttcttgtctaccctcccctgaacatgtctttttctgtttttctaat 242
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 535 cttactgcccttccttcttgtctaccctcccctgaatgtgtctttttctgtttttctgat 476
Query: 243 ctcatgcattctcttccctatcccttgattaaagtcctgcttgtgttcactaaacatcca 302
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 475 ctcatgcattctcttccctagcccttgattaaagtcctgcttgtattcactaaacatcca 416
Query: 303 actatctcc-tgccatcattgcatggagatatgaggtgaatggaagccagaaagggacac 361
|||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 415 actatc-ccgtgccatcattccatggagatatgaggtgaatggaagccagaaagggacac 357
Query: 362 taggagatcccatgatgctccagccttccttgtcaggaactattttttcaggttagaaat 421
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 356 caggagatcccatgatgctccagccttccttgtcaggaactagtttttcaggttagaaat 297
Query: 422 gctatccctctctgtggttgatcagagagaaaaaagggaaaagatacaccacacacatac 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gctatccctctctgtgactgatcagagagaaaaaagggaaaagatacaccacacacatat 237
Query: 482 accatatgaatgtcacacaatacatgcacac 512
|||||||||||||||||||||||||||||||
Sbjct: 236 accatatgaatgtcacacaatacatgcacac 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_l19.g1 MSMg01no395_l19.g1 CHROMAT_FILE:
MSMg01no395_l19.g1 PHD_FILE: MSMg01no395_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:40 2005
(534 letters)
>mm_chr4_114136289_114137225
Length = 937
Score = 932 bits (482), Expect = 0.0
Identities = 523/538 (97%), Gaps = 5/538 (0%)
Strand = Plus / Plus
Query: 1 tcagtgaaggggttatagaaggacaggcctccattggggctgcttggactagcagtccta 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcagtgaaggggttatagaaggacaggcctccattggggctgcttagactagcagtccta 260
Query: 61 ---tgtggaagctccctagcaaaccgaaacaagtggagacaaaaactttcctaactag-a 116
||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct: 261 ctatgtggaatctccctagcaaaccaaaacaagtgaagacaaaaactttcctaactagga 320
Query: 117 gccagagtctgtgggaaggagccttgaaccttctccaggtgcgaggaacactcaattcct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagagtctgtgggaaggagccttgaaccttctccaggtgcgaggaacactcaattcct 380
Query: 177 gcagcctccaggacttgacccagcatattcagaacacagtcttggagctatggggtgcag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcctccaggacttgacccagcatattcagaacacagtcttggagctatggggtgcag 440
Query: 237 tcatacaccccctattatcctcagactgtggtctcttttcctccaggatgtagtaagcag 296
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tcatacacccccaattatcctcagactgtggtctcttttcctccaggatatagtaagcag 500
Query: 297 cttagtaggtaaggaccccctttgttttcttccctcttcttttcctttgagggacaatga 356
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttagtagataaggacaccctttgttttcttccctcttcttttcctttgagggacaatga 560
Query: 357 tttcatttttattatccacagctaaacatggtttgccaaaaataatcaaagaaacatatt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcatttttattatccacagctaaacatggtttgccaaaaataatcaaagaaacatatt 620
Query: 417 gatgatatacaaaaattatcaggaaagtttaggaaaatgacgttttatatatttatatat 476
|||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 621 gatgatatacaaaaat-atcaggaaagtttagtaaaatgactttttatatatttatatat 679
Query: 477 gaaaatcagttatatttctatgcatcaggaacaagtaaaacatgaaagctatatgact 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaaatcagttatatttctatgcatcaggaacaagtaaaacatgaaagctatatgact 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 937
Length adjustment: 10
Effective length of query: 524
Effective length of database: 927
Effective search space: 485748
Effective search space used: 485748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
